CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.1693.1.A1_at

Gene name
Homology with Arabidopsis Similar to At3g55670: - (HF=4e-3)

Module size 17 genes

NF 0.40

%ile 44.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.99 Zm.1693.1.A1_at BM382165 - - 4e-3 At3g55670 - O.I. H.G. S.X.
0.56 74.4 0.99 Zm.6195.1.A1_x_at AI668513 hypothetical protein LOC100275106 - 4e+0 At4g17790 - O.I. H.G. S.X.
0.50 65.7 0.99 Zm.5825.1.A1_at AI649790 hypothetical protein LOC100279429 - 1e-2 At1g10390 nucleoporin family protein O.I. H.G. S.X.
0.44 55.7 0.99 Zm.11779.1.A1_at CO527258 hypothetical protein LOC100217298 - 3e+0 At3g47800 aldose 1-epimerase family protein O.I. H.G. S.X.
0.41 49.7 0.99 Zm.14014.1.A1_at CF050089 NADH-ubiquinone oxidoreductase 23 kDa subunit - 2e-62 At1g79010 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) O.I. H.G. S.X.
0.40 48.5 0.99 ZmAffx.1019.1.S1_at AI881532 - - 3e+0 At2g29070 ubiquitin fusion degradation UFD1 family protein O.I. H.G. S.X.
0.40 48.5 0.99 ZmAffx.485.1.A1_at AI691349 - - 8e-1 Atmg00140 - O.I. H.G. S.X.
0.39 45.6 0.99 ZmAffx.219.1.A1_at AI670227 - - 3e+0 At3g30430 F-box family protein O.I. H.G. S.X.
0.35 38.9 0.99 Zm.13841.1.S1_at AY104076.1 - - 2e-42 At3g62270 anion exchange family protein O.I. H.G. S.X.
0.32 33.4 0.99 Zm.6944.4.A1_a_at AW498023 actin-1 - 4e-31 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.31 31.6 1.00 Zm.14692.1.A1_s_at BQ539260 hypothetical protein LOC100276042 - 5e+0 At1g09195 - O.I. H.G. S.X.
0.30 29.8 0.99 Zm.13412.1.S1_x_at CF630246 - - 2e-7 At2g36230 APG10 (ALBINO AND PALE GREEN 10) O.I. H.G. S.X.
0.29 28.1 0.99 Zm.13322.1.A1_at BM895136 - - 1e+0 At1g52855 unknown protein O.I. H.G. S.X.
0.26 22.7 1.00 Zm.14471.1.A1_a_at CF017210 60S ribosomal protein L7-1 - 8e-31 At2g44120 60S ribosomal protein L7 (RPL7C) O.I. H.G. S.X.
0.25 21.3 0.99 Zm.1413.1.S1_at BF729282 - - 6e+0 At2g11005 glycine-rich protein O.I. H.G. S.X.
0.24 19.8 0.99 Zm.41.1.S1_at AI600908 calcium dependent protein kinase1 - 1e-16 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.
0.16 9.4 1.00 ZmAffx.87.1.A1_at AI665344 - - 1e+1 At5g39330 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.4 99.5 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
15.4 99.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1 98.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7 98.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1 98.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6 98.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5 98.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6 98.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1 98.6 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2 98.5 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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