Co-expression analysis

Gene ID	Zm.16913.1.S1_at
Gene name	GT1 protein
Homology with Arabidopsis	Similar to At4g16370: ATOPT3 (OLIGOPEPTIDE TRANSPORTER) (HF=2e-24)
Module size	6 genes
NF	0.80
%ile	97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.16913.1.S1_at	BQ619268	GT1 protein	-	2e-24	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.99	Zm.17408.1.A1_at	BE129731	hypothetical protein LOC100273071	-	4e-1	At2g41380	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.99	Zm.10811.7.S1_at	BG837489	Glycine-rich protein	-	7e-3	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.10812.1.A1_at	CD976050	-	-	2e-4	At2g28450	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	Zm.1100.1.S1_at	AY107948.1	-	-	4e+0	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	Zm.14513.4.S1_at	CK827180	hypothetical protein LOC100192746	-	7e-31	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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