Co-expression analysis

Gene ID Zm.16907.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g18000: XPL1 (XIPOTL 1) (HF=4e-50)
Module size 6 genes
NF 0.62
%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.98Zm.16907.1.S1_atAI691771--4e-50At3g18000XPL1 (XIPOTL 1)O.I.H.G.S.X.
0.7389.90.97Zm.9879.2.S1_atCA404875vignain-5e-5At4g35350XCP1 (XYLEM CYSTEINE PEPTIDASE 1)O.I.H.G.S.X.
0.5571.60.97Zm.2903.1.A1_atCF019919hypothetical protein LOC100274564-9e-8At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.5065.70.97Zm.18323.1.A1_a_atCO532638hypothetical protein LOC100193167-5e-1At4g27120unknown proteinO.I.H.G.S.X.
0.4455.70.97Zm.13525.1.A1_atCB27825212-oxo-phytodienoic acid reductase-2e+1At5g02220unknown proteinO.I.H.G.S.X.
0.4455.70.97Zm.19155.2.A1_x_atCO526374--7e-9At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.97Zm.9559.1.S1_atAY461584.1inward rectifying shaker K+ channel-6e-21At5g46240KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)O.I.H.G.S.X.
0.5571.60.96ZmAffx.193.1.A1_atAI668444Respiratory burst oxidase-like protein C-3e+0At2g05915unknown proteinO.I.H.G.S.X.
0.5369.10.96Zm.4777.2.A1_atAI881313--5e-1At4g39770trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.
0.5065.70.95ZmAffx.750.1.S1_atAI677184--9e-1At5g1620050S ribosomal protein-relatedO.I.H.G.S.X.
0.5065.70.97Zm.18678.1.A1_a_atCO522483hypothetical protein LOC100193301-2e-8At5g65510AIL7 (AINTEGUMENTA-like 7)O.I.H.G.S.X.
0.4455.70.96Zm.11925.1.A1_atBM381896--2e-1At5g52550unknown proteinO.I.H.G.S.X.
0.4352.80.97Zm.4434.1.S1_atCA402082--2e+0At4g10925F-box family proteinO.I.H.G.S.X.
0.4048.50.96Zm.4320.1.A1_atBM079885hypothetical protein LOC100276939-5e+0At5g02502unknown proteinO.I.H.G.S.X.
0.4048.50.97Zm.18819.1.S1_atCO522421hypothetical protein LOC100193533-1e+0At5g65730xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeO.I.H.G.S.X.
0.3844.20.96Zm.18481.1.A1_atCO525607--2e+1At5g55570unknown proteinO.I.H.G.S.X.
0.3844.20.94Zm.10677.1.A1_atBQ538971hypothetical protein LOC100272604-1e-1At3g28150unknown proteinO.I.H.G.S.X.
0.3641.30.96Zm.15683.1.A1_atCD440363--2e-2At1g27435unknown proteinO.I.H.G.S.X.
0.3641.30.97Zm.5161.1.S1_atCD437341leafbladeless1-1e+0At1g54170CID3 (CTC-Interacting Domain 3)O.I.H.G.S.X.
0.3641.30.97Zm.6241.1.A1_atBQ487255hypothetical protein LOC100274594-3e-1At3g56370leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.3538.90.94Zm.5062.1.A1_atAW288917hypothetical protein LOC100191591-6e-13At1g72000beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeO.I.H.G.S.X.
0.3538.90.95Zm.4111.1.A1_atCO533612hypothetical protein LOC100272476-5e-5At5g03880electron carrierO.I.H.G.S.X.
0.3336.00.96Zm.16911.1.A1_atBM332269--3e-11At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.3131.60.96Zm.4119.1.S1_atAI854985ATP binding protein-2e-4At3g09010protein kinase family proteinO.I.H.G.S.X.
0.3029.80.96Zm.10431.1.S1_atBQ485377--1e+1At5g01300phosphatidylethanolamine-binding family proteinO.I.H.G.S.X.
0.3029.80.94Zm.1241.1.A1_atAY111716.1fiber protein Fb34-6e+0At4g24240WRKY7O.I.H.G.S.X.
0.2928.10.93Zm.4522.1.S1_atAI734575hypothetical protein LOC100194076-4e-1At1g56710glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.2928.10.97Zm.6045.1.A1_s_atX73980.1alpha tubulin4-0At1g50010TUA2O.I.H.G.S.X.
0.2928.10.97Zm.4204.1.S1_a_atAY103547.1--2e-26At2g24200cytosol aminopeptidaseO.I.H.G.S.X.
0.2724.60.95Zm.1758.1.S1_atCF031392--1e-4At5g41430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2724.60.97Zm.7405.1.A1_atBM078260--3e+0At5g63480unknown proteinO.I.H.G.S.X.
0.2724.60.94Zm.2220.2.S1_atBQ528737hypothetical protein LOC100277563-6e+0At3g43520unknown proteinO.I.H.G.S.X.
0.2622.70.97Zm.4132.1.A1_atCO529833hypothetical protein LOC100276765-4e-14At1g16520unknown proteinO.I.H.G.S.X.
0.2521.30.94Zm.5903.1.S1_atCF043877Hypothetical protein LOC100191177-1e+0At4g37925NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex)O.I.H.G.S.X.
0.2521.30.95Zm.10383.4.S1_a_atAY106957.1transcription factor subunit NF-YB2 /// hypothetical protein LOC100273424 /// CAAT-box DNA binding protein subunit B (NF-YB)-3e-12At3g53340NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)O.I.H.G.S.X.
0.2521.30.95Zm.2977.1.A1_atAW155840--1e-5At2g40280dehydration-responsive family proteinO.I.H.G.S.X.
0.2521.30.97Zm.2072.1.S1_atBG842253--7e-1At5g14260SET domain-containing proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.797.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.291.3GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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