Co-expression analysis

Gene ID	Zm.16907.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g18000: XPL1 (XIPOTL 1) (HF=4e-50)
Module size	6 genes
NF	0.62
%ile	83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.98	Zm.16907.1.S1_at	AI691771	-	-	4e-50	At3g18000	XPL1 (XIPOTL 1)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.97	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.2903.1.A1_at	CF019919	hypothetical protein LOC100274564	-	9e-8	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.18323.1.A1_a_at	CO532638	hypothetical protein LOC100193167	-	5e-1	At4g27120	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.13525.1.A1_at	CB278252	12-oxo-phytodienoic acid reductase	-	2e+1	At5g02220	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.19155.2.A1_x_at	CO526374	-	-	7e-9	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the grape gene, 1622556_at, orthologous to the query gene, Zm.16907.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	1622556_at	At3g18000	hypothetical protein LOC100254279	-	6e-59	At1g73600	methyltransferase/ phosphoethanolamine N-methyltransferase	O.I.	H.G.	S.X.	Please select
0.53	75.2	1621541_at	At3g18000	-	-	4e+0	At5g18310	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1610695_at	At3g18000	hypothetical protein LOC100254279	-	3e-1	At4g13540	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1618054_at	At3g18000	hypothetical protein LOC100263127	-	5e-15	At3g63200	PLP9 (PATATIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1614022_at	At3g18000	hypothetical protein LOC100252502	-	6e-9	At4g36970	remorin family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1617432_at	At3g18000	hypothetical protein LOC100245520	-	1e-2	At1g22440	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.19	20.9	1606755_at	At3g18000	hypothetical protein LOC100248417	-	1e-6	At2g30400	OFP2 (OVATE FAMILY PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Back to the CoP portal site

Back to the KAGIANA project homepage