Co-expression analysis

Gene ID Zm.16907.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g18000: XPL1 (XIPOTL 1) (HF=4e-50)
Module size 6 genes
NF 0.62
%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.98Zm.16907.1.S1_atAI691771--4e-50At3g18000XPL1 (XIPOTL 1)O.I.H.G.S.X.
0.7389.90.97Zm.9879.2.S1_atCA404875vignain-5e-5At4g35350XCP1 (XYLEM CYSTEINE PEPTIDASE 1)O.I.H.G.S.X.
0.5571.60.97Zm.2903.1.A1_atCF019919hypothetical protein LOC100274564-9e-8At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.5065.70.97Zm.18323.1.A1_a_atCO532638hypothetical protein LOC100193167-5e-1At4g27120unknown proteinO.I.H.G.S.X.
0.4455.70.97Zm.13525.1.A1_atCB27825212-oxo-phytodienoic acid reductase-2e+1At5g02220unknown proteinO.I.H.G.S.X.
0.4455.70.97Zm.19155.2.A1_x_atCO526374--7e-9At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.797.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.291.3GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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