Co-expression analysis

Gene ID Zm.16892.3.S1_x_at
Gene name calmodulin binding protein
Homology with ArabidopsisSimilar to At3g22190: IQD5 (IQ-domain 5) (HF=5e-3)
Module size 8 genes
NF 0.46
%ile 55.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5267.30.97Zm.16892.3.S1_x_atCB281906calmodulin binding protein-5e-3At3g22190IQD5 (IQ-domain 5)O.I.H.G.S.X.
0.6381.10.97Zm.4540.1.S1_atAY107181.1hypothetical protein LOC100280182-8e-1At1g11650RNA-binding protein 45 (RBP45), putativeO.I.H.G.S.X.
0.5674.40.97Zm.15850.1.S1_atBM381062metallothionein-like protein type 2-4e-7At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.4861.30.97Zm.4775.1.A1_atCK826898--1e-1At2g36695unknown proteinO.I.H.G.S.X.
0.4455.70.97Zm.17499.1.A1_atCK145371hypothetical protein LOC100279269-3e-1At2g03230-O.I.H.G.S.X.
0.4455.70.97Zm.9852.1.A1_atBM381073syntaxin 121-5e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.3641.30.97Zm.6423.2.A1_atAI691968hypothetical protein LOC100273356-1e+0At3g23180-O.I.H.G.S.X.
0.3029.80.97Zm.4883.1.A1_atAY107709.1Hypothetical protein LOC100216906-2e-5At1g07530SCL14 (SCARECROW-LIKE 14)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.398.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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