Co-expression analysis

Gene ID	Zm.16814.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g25840: protein kinase family protein (HF=2e-14)
Module size	16 genes
NF	0.40
%ile	45.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.97	Zm.16814.1.A1_at	CK368508	-	-	2e-14	At3g25840	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.11150.1.A1_at	CO518263	hypothetical protein LOC100279642	-	2e+0	At5g61110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.8935.1.A1_at	BM381068	hypothetical protein LOC100276386	-	7e+0	At3g58470	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.3892.4.A1_a_at	AF136828.1	elongation factor 1 alpha	-	3e-173	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.3094.1.S1_at	CK986065	-	-	7e-16	At1g03260	-	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.6259.1.A1_at	AI691171	transferase, transferring glycosyl groups	-	2e+0	At4g23490	fringe-related protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.8582.1.A1_at	BM333994	-	-	1e+0	At3g59280	TXR1 (THAXTOMIN A RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.16977.1.S1_at	AB102956.1	histidine kinase 2	-	4e-20	At1g27320	AHK3 (ARABIDOPSIS HISTIDINE KINASE 3)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.347.1.S1_at	U82230.1	prolamin-box binding factor1	-	1e-5	At1g47655	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.1074.1.A1_at	CF631708	-	-	1e+0	At1g62940	ACOS5 (ACYL-COA SYNTHETASE 5)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.16845.1.A1_at	BM079430	-	-	2e-2	At2g42910	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.16848.2.A1_at	CD437503	hypothetical protein LOC100193258	-	1e-7	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.16846.1.A1_at	AY103657.1	seed specific protein Bn15D1B	-	3e+1	At5g07110	PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.6984.8.A1_a_at	AI770763	Hypothetical protein LOC100193571	-	4e+0	At5g28615	-	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.98	Zm.14501.3.A1_at	AY107741.1	NAC domain-containing protein 68	-	2e-15	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.10745.1.A1_at	BQ539349	hypothetical protein LOC100272654	-	4e-3	At4g25990	CIL	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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