Co-expression analysis

Gene ID	Zm.16805.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g70490: ARFA1D (HF=2e-105)
Module size	6 genes
NF	0.55
%ile	72.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.96	Zm.16805.1.A1_at	AI737061	-	-	2e-105	At1g70490	ARFA1D	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.96	Zm.7081.5.S1_at	AI711612	-	-	6e+0	At4g22660	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.6774.1.A1_at	CA827779	-	-	7e-1	At5g60100	APRR3 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.6758.1.A1_at	CF623725	hypothetical protein LOC100279733	-	2e+0	At4g35480	RHA3B	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.5351.1.S1_at	AI619365	-	-	5e-1	At1g56200	emb1303 (embryo defective 1303)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.14518.1.S1_at	CD434065	pyruvate decarboxylase	-	6e-28	At5g54960	PDC2 (pyruvate decarboxylase-2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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