Co-expression analysis

Gene ID	Zm.16779.1.A1_at
Gene name	hypothetical protein LOC100216924
Homology with Arabidopsis	Similar to At5g48810: CB5-D (CYTOCHROME B5 ISOFORM D) (HF=2e-3)
Module size	6 genes
NF	0.59
%ile	78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.89	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.88	Zm.11653.1.A1_at	CF243979	hypothetical protein LOC100191865	-	6e+0	At3g07460	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.88	Zm.8357.1.A1_at	BM267266	-	-	1e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.93	Zm.14983.2.A1_at	AY109416.1	-	-	3e-5	At5g27150	NHX1 (NA+/H+ EXCHANGER)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.83	Zm.10261.1.A1_at	BM501576	-	-	4e-20	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.88	ZmAffx.807.1.S1_at	AI770389	-	-	3e+0	At1g65650	UCH2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.3	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.6	92.9	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.6	92.9	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.5	92.6	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.5	92.6	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.4	92.2	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.3	91.7	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the soybean gene, Gma.1186.1.S1_s_at, orthologous to the query gene, Zm.16779.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	83.4	Gma.1186.1.S1_s_at	At5g48810	-	-	3e-11	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.1445.1.S1_a_at	At5g48810	-	-	6e-7	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.1190.1.S1_at	At5g48810	4-coumarate:coenzyme A ligase	-	1e-3	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.1445.1.S1_at	At5g48810	-	-	6e-7	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.6442.2.S1_at	At5g48810	-	-	6e-5	At1g52760	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.93616.1.S1_s_at	At5g48810	-	-	2e-62	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.3956.1.S1_x_at	At5g48810	-	-	4e-139	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.22	28.1	GmaAffx.92464.1.S1_s_at	At5g48810	-	-	4e-66	At3g43190	SUS4	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.3881.2.S1_x_at	At5g48810	-	-	4e-29	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.3881.2.S1_at	At5g48810	-	-	4e-29	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.5590.1.S1_a_at	At5g48810	-	-	7e-108	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.13	16.3	Gma.4325.1.S1_at	At5g48810	-	-	7e-9	At1g06550	enoyl-CoA hydratase/isomerase family protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.15673.1.S1_at	At5g48810	-	-	3e-30	At5g19140	AILP1	O.I.	H.G.	S.X.	Please select
0.08	11.0	GmaAffx.91166.1.A1_s_at	At5g48810	-	-	3e-19	At5g19140	AILP1	O.I.	H.G.	S.X.	Please select
0.08	11.0	GmaAffx.92591.1.S1_at	At5g48810	-	-	1e-3	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	O.I.	H.G.	S.X.	Please select
0.06	9.0	GmaAffx.90764.1.S1_s_at	At5g48810	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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