CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.16779.1.A1_at

Gene name hypothetical protein LOC100216924
Homology with Arabidopsis Similar to At5g48810: CB5-D (CYTOCHROME B5 ISOFORM D) (HF=2e-3)

Module size 6 genes

NF 0.59

%ile 78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.89 Zm.16779.1.A1_at CF626512 hypothetical protein LOC100216924 - 2e-3 At5g48810 CB5-D (CYTOCHROME B5 ISOFORM D) O.I. H.G. S.X.
0.73 89.9 0.88 Zm.11653.1.A1_at CF243979 hypothetical protein LOC100191865 - 6e+0 At3g07460 unknown protein O.I. H.G. S.X.
0.67 85.8 0.88 Zm.8357.1.A1_at BM267266 - - 1e-4 At3g62020 GLP10 (GERMIN-LIKE PROTEIN 10) O.I. H.G. S.X.
0.67 85.8 0.93 Zm.14983.2.A1_at AY109416.1 - - 3e-5 At5g27150 NHX1 (NA+/H+ EXCHANGER) O.I. H.G. S.X.
0.50 65.7 0.83 Zm.10261.1.A1_at BM501576 - - 4e-20 At5g62410 SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) O.I. H.G. S.X.
0.23 18.6 0.88 ZmAffx.807.1.S1_at AI770389 - - 3e+0 At1g65650 UCH2 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.1 94.3 GSM202292 B73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9 93.8 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9 93.8 GSM202303 Mo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8 93.5 GSM202304 B73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.6 92.9 GSM202290 Mo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.6 92.9 GSM202295 Mo17xB73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.5 92.6 GSM202297 Mo17 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.5 92.6 GSM202302 B73xMo17 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.4 92.2 GSM202306 Mo17xB73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.3 91.7 GSM202296 B73xMo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g48810, orthologous to the query gene, Zm.16779.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.55 70.6 At5g48810 834939 CB5-D (CYTOCHROME B5 ISOFORM D) Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation. O.I. H.G. S.X.
0.67 81.6 At5g59880 836110 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) Encodes actin depolymerizing factor 3 (ADF3). O.I. H.G. S.X.
0.65 79.6 At2g03680 814896 SPR1 (SPIRAL1) The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle. O.I. H.G. S.X.
0.53 68.6 At4g29350 829056 PFN2 (PROFILIN 2) Encodes profilin2, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression. O.I. H.G. S.X.
0.51 66.3 At4g11150 826716 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis. O.I. H.G. S.X.
0.51 66.3 At1g26550 839195 peptidyl-prolyl cis-trans isomerase PPIC-type family protein F:isomerase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. H.G. S.X.
0.47 61.2 At3g48140 823969 senescence-associated protein, putative F:molecular_function unknown;P:leaf senescence;C:endomembrane system;P O.I. H.G. S.X.
0.46 59.8 At3g12290 820409 tetrahydrofolate dehydrogenase/cyclohydrolase, putative F:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;OBMFPA O.I. H.G. S.X.
0.44 57.2 At1g16890 838260 ubiquitin-conjugating enzyme, putative UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro. O.I. H.G. S.X.
0.44 57.2 At4g22310 828326 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MFPO O.I. H.G. S.X.
0.44 57.2 At2g33470 817912 GLTP1 (glycolipid transfer protein 1) F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:plasma membrane;MFPO O.I. H.G. S.X.
0.40 50.8 At2g44525 819060 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BMOFP O.I. H.G. S.X.
0.39 48.4 At3g04830 819643 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MOFBAP O.I. H.G. S.X.
0.38 46.7 At2g47170 819330 ARF1A1C Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. O.I. H.G. S.X.
0.37 45.0 At2g19790 816498 clathrin adaptor complex small chain family protein F:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MOFP O.I. H.G. S.X.
0.34 39.8 At1g04750 839419 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) vesicle-associated membrane protein 7B (At VAMP7B) mRNA, O.I. H.G. S.X.
0.33 38.1 At3g08610 820008 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;P O.I. H.G. S.X.
0.31 33.8 At5g08290 830725 YLS8 Encodes Dim1 homolog. O.I. H.G. S.X.
0.29 30.3 At1g49140 841337 NADH-ubiquinone oxidoreductase-related F:unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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