Co-expression analysis

Gene ID	Zm.1657.1.A1_at
Gene name	hypothetical protein LOC100192014
Homology with Arabidopsis	Similar to At5g51950: glucose-methanol-choline (GMC) oxidoreductase family protein (HF=7e-2)
Module size	31 genes
NF	0.45
%ile	54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.2	0.97	Zm.1657.1.A1_at	BG842419	hypothetical protein LOC100192014	-	7e-2	At5g51950	glucose-methanol-choline (GMC) oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.6532.4.S1_a_at	BM380149	dehydrin 13	-	9e-2	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.5481.2.A1_at	AW017536	dek protein	-	1e-3	At3g48710	-	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.2611.1.A1_a_at	BM348249	hypothetical protein LOC100278318	-	3e-1	At1g49820	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.2823.1.A1_at	BI097694	ankyrin protein kinase-like	-	2e+1	At5g40260	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.12678.2.S1_at	CN844593	-	-	8e-11	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.18385.1.S1_at	CO530624	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.97	Zm.1835.2.A1_at	CK985959	cortical cell-delineating protein	-	2e+0	At3g26660	LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.6051.1.S1_a_at	AY109052.1	-	-	2e+0	At1g72430	auxin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.17849.1.A1_at	AY110409.1	Hypothetical protein LOC100192672	-	1e-71	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.12369.1.S1_at	AY107124.1	-	-	2e+1	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.4536.1.S1_at	CF348908	kinesin heavy chain isolog	-	7e-4	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.5133.1.S1_at	CO526428	hypothetical protein LOC100273486	-	2e-1	At1g01710	acyl-CoA thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.2906.1.S1_at	AY110115.1	somatic embryogenesis receptor-like kinase2	-	2e-51	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.98	Zm.5313.2.A1_at	CA398418	60S ribosomal protein L12	-	9e-9	At2g37190	60S ribosomal protein L12 (RPL12A)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	Zm.280.1.A1_at	U58208.1	Binding protein homolog1	-	0	At5g42020	BIP2	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	ZmAffx.718.1.S1_at	AI739895	-	-	8e-1	At1g14440	AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	ZmAffx.536.1.A1_at	AI711796	-	-	1e+1	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	ZmAffx.531.1.A1_at	AI711719	-	-	8e-1	At5g20370	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.11598.1.A1_at	BM379212	-	-	1e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.16892.2.A1_at	CA403833	-	-	3e-6	At3g09710	IQD1 (IQ-DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.11611.1.A1_at	BM379298	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	ZmAffx.996.1.A1_at	AI857152	-	-	3e+0	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.99	Zm.5070.1.A1_at	AY108736.1	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.18084.1.A1_at	CD997940	-	-	8e-7	At1g16870	mitochondrial 28S ribosomal protein S29-related	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.98	Zm.6973.1.A1_at	AY109828.1	Hypothetical protein LOC100216936	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	ZmAffx.1017.1.A1_at	AI881523	Hypothetical protein LOC100193713	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.11338.1.A1_at	BM349130	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.97	Zm.4774.1.A1_at	CF637265	hypothetical protein LOC100191958	-	1e+0	At3g26360	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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