Co-expression analysis

Gene ID Zm.16562.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g17220: protein kinase, putative (HF=6e-3)
Module size 13 genes
NF 0.58
%ile 76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5976.10.88Zm.16562.1.S1_atCO530845--6e-3At2g17220protein kinase, putativeO.I.H.G.S.X.
0.7389.90.90RPTR-Zm-J01636-1_atRPTR-Zm-J01636-1---O.I.H.G.S.X.
0.7188.20.90RPTR-Zm-X17220-1_atRPTR-Zm-X17220-1---O.I.H.G.S.X.
0.7087.00.92Zm.15903.2.A1_atBM266872--2e-11At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.6986.50.91Zm.144.1.S1_x_atU10696.1metallothionein2-2e+1At5g38344transmembrane receptorO.I.H.G.S.X.
0.6785.80.90RPTR-Zm-J01347-4_atRPTR-Zm-J01347-4---O.I.H.G.S.X.
0.6381.10.93Zm.12244.2.S1_atAI668243--9e-1At5g46940invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.5267.30.90Zm.15807.1.A1_atAY111212.1--1e+0At4g19590DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.5166.40.90Zm.17312.1.A1_atCK369501--5e+0At5g39700MYB89 (myb domain protein 89)O.I.H.G.S.X.
0.4556.40.91Zm.1079.4.S1_x_atAY109373.1--2e-2At5g14740CA2 (CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.4455.70.93Zm.1818.1.S1_a_atBM073458hypothetical protein LOC100194358-5e+0At5g48545histidine triad family protein / HIT family proteinO.I.H.G.S.X.
0.4048.50.90Zm.13661.1.A1_atAY107142.1--2e+0At4g25710kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.3945.60.92Zm.16502.5.A1_atAI586439hypothetical protein LOC100280237-1e-12At5g61780tudor domain-containing protein / nuclease family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.299.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
4.095.8GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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