Co-expression analysis

Gene ID Zm.16536.1.A1_a_at
Gene name hypothetical protein LOC100272866 /// spermidine synthase 1
Homology with ArabidopsisSimilar to At1g23820: SPDS1 (spermidine synthase 1) (HF=1e-17)
Module size 7 genes
NF 0.56
%ile 74.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7590.80.98Zm.16536.1.A1_a_atAY103592.1hypothetical protein LOC100272866 /// spermidine synthase 1-1e-17At1g23820SPDS1 (spermidine synthase 1)O.I.H.G.S.X.
0.5775.10.98Zm.16547.1.A1_atCO520746aldehyde dehydrogenase, dimeric NADP-preferring-6e+0At3g10020unknown proteinO.I.H.G.S.X.
0.5369.10.98Zm.383.1.S1_s_atAF023165.1leucine-rich repeat transmembrane protein kinase 2-1e-22At3g14350SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)O.I.H.G.S.X.
0.5369.10.98Zm.3086.2.A1_a_atCF633704alpha-1,4-glucan-protein synthase-5e+0At4g11350transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.4352.80.98Zm.16536.1.A1_atAY103592.1spermidine synthase 1-1e-17At1g23820SPDS1 (spermidine synthase 1)O.I.H.G.S.X.
0.4251.30.98Zm.496.1.S1_atAF236370.1prohibitin3-7e-7At5g40770ATPHB3 (PROHIBITIN 3)O.I.H.G.S.X.
0.4048.50.98Zm.8152.1.S1_atBM073102hypothetical protein LOC100192746-1e-81At4g40040histone H3.2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.699.9GSM290555CCR mutant M1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO
8.998.2GSM290556CCR mutant M2 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO
4.796.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
4.095.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.895.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.695.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.394.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage