Co-expression analysis

Gene ID	Zm.16532.2.A1_at
Gene name	60S ribosomal protein L18a
Homology with Arabidopsis	Similar to At3g14600: 60S ribosomal protein L18A (RPL18aC) (HF=4e-69)
Module size	6 genes
NF	0.70
%ile	92.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.98	Zm.16532.2.A1_at	AW331554	60S ribosomal protein L18a	-	4e-69	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.98	ZmAffx.1020.1.A1_at	AI881536	-	-	3e-7	At1g75640	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	Zm.2806.1.A1_a_at	AW067337	-	-	6e-1	At2g41660	MIZ1 (mizu-kussei 1)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.384.1.A1_at	AF001635.1	physical impedance induced protein2	-	6e+0	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.9791.1.S1_at	AY110405.1	hypothetical protein LOC100216896	-	1e-78	At3g52580	40S ribosomal protein S14 (RPS14C)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.5194.1.A1_at	BM269267	-	-	1e-3	At2g46070	MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM206312	Upper pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.7	93.2	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.6	92.9	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.6	92.9	GSM206318	Lower pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.5	92.6	GSM253271	ZM_4.5d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
2.4	92.2	GSM206315	Upper pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.3	91.7	GSM206321	Lower pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.2	91.3	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.1	90.8	GSM206322	Lower pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.1	90.8	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage