Co-expression analysis

Gene ID	Zm.16513.9.A1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g09810: ACT7 (ACTIN 7) (HF=0)
Module size	15 genes
NF	0.40
%ile	45.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.3	0.97	Zm.16513.9.A1_a_at	CD444572	-	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.7121.2.A1_x_at	AF457960.1	-	-	5e-6	At3g12120	FAD2 (FATTY ACID DESATURASE 2)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	Zm.6244.2.S1_at	AI677548	-	-	8e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.1662.1.A1_a_at	CF626953	-	-	6e-1	At5g35570	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.7122.1.A1_at	AY111472.1	-	-	2e+0	At1g35580	CINV1 (cytosolic invertase 1)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.99	Zm.16834.1.A1_at	AY109979.1	-	-	4e-1	At1g64370	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.99	Zm.6787.1.A1_a_at	AF277454.1	hypothetical protein LOC100274407 /// UMP synthase	-	2e-17	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.15891.1.S1_at	AI714925	-	-	1e-14	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.98	Zm.4409.1.A1_at	CD964941	hypothetical protein LOC100194336	-	8e+0	At3g58100	PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.99	Zm.17310.1.A1_at	CK368488	-	-	7e+0	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.98	Zm.6785.1.A1_a_at	BU037307	S-adenosylmethionine decarboxylase proenzyme	-	3e-1	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.14476.1.A1_a_at	AY105708.1	protein disulfide isomerase /// protein disulfide isomerase	-	1e-3	At5g60640	ATPDIL1-4 (PDI-LIKE 1-4)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.4078.1.A1_at	BM079694	protein kinase APK1A	-	6e-16	At3g01300	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.99	Zm.2979.1.S1_at	BG841486	trafficking protein particle complex protein 2	-	2e-12	At1g80500	-	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.99	Zm.7176.1.A1_at	CF629363	-	-	5e+0	At5g05210	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.1	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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