Co-expression analysis

Gene ID	Zm.16508.3.A1_x_at
Gene name	ribosomal protein L39
Homology with Arabidopsis	Similar to At3g02190: 60S ribosomal protein L39 (RPL39B) (HF=4e-9)
Module size	6 genes
NF	0.65
%ile	86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.16508.3.A1_x_at	AI739900	ribosomal protein L39	-	4e-9	At3g02190	60S ribosomal protein L39 (RPL39B)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.7021.1.S1_at	CD440551	mitochondrial import inner membrane translocase subunit Tim8	-	3e-4	At5g50810	TIM8	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.6093.2.S1_at	CD440434	translocon-associated protein beta containing protein	-	6e-1	At5g14030	translocon-associated protein beta (TRAPB) family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.3168.1.A1_x_at	AW331178	-	-	5e-2	At3g51960	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.19234.1.A1_at	AI622555	hypothetical protein LOC100191668	-	3e-1	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.10826.1.S1_at	BQ619411	hypothetical protein LOC100274249	-	8e-9	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	94.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9	93.8	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9	93.8	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.8	93.5	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.8	93.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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