Co-expression analysis

Gene ID	Zm.16508.3.A1_at
Gene name	ribosomal protein L39
Homology with Arabidopsis	Similar to At3g02190: 60S ribosomal protein L39 (RPL39B) (HF=4e-9)
Module size	6 genes
NF	0.08
%ile	4.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.94	Zm.16508.3.A1_at	AI739900	ribosomal protein L39	-	4e-9	At3g02190	60S ribosomal protein L39 (RPL39B)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.95	Zm.5725.1.A1_at	CK986059	In2-1 protein	-	1e+1	At5g66090	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.95	Zm.6051.1.S1_at	AY109052.1	-	-	2e+0	At1g72430	auxin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.94	Zm.4905.1.S1_at	AY106392.1	hypothetical protein LOC100272547	-	1e-14	At4g27120	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.94	Zm.4039.1.A1_at	AW017855	-	-	2e-2	At1g55950	-	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.95	Zm.7015.1.S1_at	CO522815	-	-	5e-8	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.9	89.6	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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