Co-expression analysis

Gene ID Zm.16508.2.A1_at
Gene name 60S ribosomal protein L39 /// ribosomal protein L39
Homology with ArabidopsisSimilar to At4g31985: 60S ribosomal protein L39 (RPL39C) (HF=1e-15)
Module size 6 genes
NF 0.66
%ile 87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.16508.2.A1_atCF01844960S ribosomal protein L39 /// ribosomal protein L39-1e-15At4g3198560S ribosomal protein L39 (RPL39C)O.I.H.G.S.X.
0.7389.90.97Zm.14806.1.A1_atCF632779hypothetical protein LOC100217201-1e-31At1g66340ETR1 (ETHYLENE RESPONSE 1)O.I.H.G.S.X.
0.6785.80.98Zm.3468.1.A1_atBM337587FYVE zinc finger family protein-1e-2At2g26210ankyrin repeat family proteinO.I.H.G.S.X.
0.5976.10.97Zm.6139.2.A1_atCF018619methionyl-tRNA synthetase-1e-5At2g40660tRNA-binding region domain-containing proteinO.I.H.G.S.X.
0.5065.70.98Zm.7411.1.A1_atBM072807hypothetical protein LOC100277462-2e+0At2g14390unknown proteinO.I.H.G.S.X.
0.4251.30.96Zm.4882.2.S1_atCK985806--9e+0At3g62920unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.793.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM253252ZM_24h_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
2.492.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM202318B73xMo17 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
2.391.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM253245ZM_12h_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
2.391.7GSM202322B73x Mo17 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
2.291.3GSM253251ZM_24h_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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