Co-expression analysis

Gene ID	Zm.16488.1.A1_at
Gene name	hypothetical protein LOC100277264 /// hypothetical protein LOC100280361 /// nonspecific lipid-transfer protein 4
Homology with Arabidopsis	Similar to At5g52160: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=7e+0)
Module size	6 genes
NF	0.51
%ile	65.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.95	Zm.16488.1.A1_at	CD440410	hypothetical protein LOC100277264 /// hypothetical protein LOC100280361 /// nonspecific lipid-transfer protein 4	-	7e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.4916.1.A1_at	AY111126.1	-	-	2e-1	At4g19340	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.1025.1.A1_at	CO530127	GAST1 protein	-	2e-2	At3g10185	-	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.95	Zm.3111.1.A1_at	AY107180.1	hypothetical protein LOC100191479	-	5e-51	At5g25100	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.5524.1.S1_at	AY104178.1	hypothetical protein LOC100277069	-	4e-3	At4g23800	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.95	Zm.6812.1.A1_s_at	AI396472	-	-	5e+0	At4g30880	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	98.7	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.7	93.2	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.6	92.9	GSM162265	Wild type 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.6	92.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.4	92.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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