Co-expression analysis

Gene ID	Zm.16350.1.S1_at
Gene name	hypothetical protein LOC100273959
Homology with Arabidopsis	Similar to At2g20930: - (HF=6e-31)
Module size	6 genes
NF	0.58
%ile	77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.16350.1.S1_at	CF349260	hypothetical protein LOC100273959	-	6e-31	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.2653.1.A1_at	BM073552	-	-	7e+0	At4g37409	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.2648.1.A1_at	AY104745.1	hypothetical protein LOC100216957	-	3e-3	At4g26740	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.97	Zm.2652.1.A1_at	AW066710	-	-	1e+1	At5g18020	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.3866.1.S1_at	CK370021	D-amino acid oxidase	-	3e+0	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the grape gene, 1612301_at, orthologous to the query gene, Zm.16350.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	1612301_at	At2g20930	hypothetical protein LOC100241847	-	4e-35	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	1615845_s_at	At2g20930	hypothetical protein LOC100265371	-	3e-4	At2g18770	signal recognition particle binding	O.I.	H.G.	S.X.	Please select
0.34	46.8	1607954_at	At2g20930	hypothetical protein LOC100256688	-	7e-5	At3g59830	ankyrin protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	1622448_at	At2g20930	hypothetical protein LOC100252610	-	4e+0	At5g60670	60S ribosomal protein L12 (RPL12C)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1618191_at	At2g20930	hypothetical protein LOC100254158	-	1e+0	At4g36510	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1613782_at	At2g20930	hypothetical protein LOC100251971	-	4e-1	At1g71130	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	1607642_at	At2g20930	hypothetical protein LOC100247098	-	8e-36	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.25	30.5	1621900_s_at	At2g20930	hypothetical protein LOC100246013	-	3e-49	At3g13224	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1616912_at	At2g20930	hypothetical protein LOC100246170	-	6e-6	At3g55600	-	O.I.	H.G.	S.X.	Please select
0.20	22.4	1615004_at	At2g20930	hypothetical protein LOC100243563	-	2e-106	At1g45000	26S proteasome regulatory complex subunit p42D, putative	O.I.	H.G.	S.X.	Please select
0.20	22.4	1615353_at	At2g20930	-	-	4e-12	At4g04614	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1619026_s_at	At2g20930	hypothetical protein LOC100265941	-	3e-10	At3g20800	rcd1-like cell differentiation protein, putative	O.I.	H.G.	S.X.	Please select
0.13	13.3	1613718_s_at	At2g20930	hypothetical protein LOC100241422	-	7e+0	At5g11120	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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