Co-expression analysis

Gene ID	Zm.16350.1.S1_at
Gene name	hypothetical protein LOC100273959
Homology with Arabidopsis	Similar to At2g20930: - (HF=6e-31)
Module size	6 genes
NF	0.58
%ile	77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.16350.1.S1_at	CF349260	hypothetical protein LOC100273959	-	6e-31	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.2653.1.A1_at	BM073552	-	-	7e+0	At4g37409	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.2648.1.A1_at	AY104745.1	hypothetical protein LOC100216957	-	3e-3	At4g26740	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.97	Zm.2652.1.A1_at	AW066710	-	-	1e+1	At5g18020	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.3866.1.S1_at	CK370021	D-amino acid oxidase	-	3e+0	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the wheat gene, Ta.21086.1.S1_a_at, orthologous to the query gene, Zm.16350.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.9	Ta.21086.1.S1_a_at	At2g20930	-	-	4e-38	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.85	93.8	Ta.21374.1.S1_at	At2g20930	-	-	5e-38	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select
0.80	92.2	Ta.21374.1.S1_x_at	At2g20930	-	-	5e-38	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select
0.70	87.2	Ta.10624.1.S1_at	At2g20930	-	-	5e-4	At2g47960	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.9	Ta.14707.1.S1_at	At2g20930	Eukaryotic initiation factor 4E p26 subunit	-	1e-7	At1g29550	eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.8245.1.S1_at	At2g20930	-	-	2e-35	At1g04810	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.6566.1.S1_at	At2g20930	-	-	3e-71	At2g20140	26S protease regulatory complex subunit 4, putative	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.14429.1.S1_a_at	At2g20930	-	-	1e-20	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.14393.1.S1_at	At2g20930	-	-	8e-35	At2g27020	PAG1	O.I.	H.G.	S.X.	Please select
0.45	65.2	Ta.808.1.S1_at	At2g20930	HBP-1b	-	2e-5	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.14429.1.S1_at	At2g20930	-	-	1e-20	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.23012.1.S1_at	At2g20930	-	-	7e-20	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.14415.1.S1_at	At2g20930	20S proteasome beta 7 subunit	-	4e-3	At1g56450	PBG1	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.10983.1.S1_a_at	At2g20930	-	-	3e+0	At3g53530	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.1998.2.S1_a_at	At2g20930	-	-	2e-53	At1g25490	RCN1 (ROOTS CURL IN NPA)	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.2207.1.S1_at	At2g20930	-	-	2e-56	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.1714.1.A1_at	At2g20930	-	-	3e-2	At4g39190	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage