Co-expression analysis

Gene ID	Zm.16350.1.S1_at
Gene name	hypothetical protein LOC100273959
Homology with Arabidopsis	Similar to At2g20930: - (HF=6e-31)
Module size	6 genes
NF	0.58
%ile	77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.16350.1.S1_at	CF349260	hypothetical protein LOC100273959	-	6e-31	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.2653.1.A1_at	BM073552	-	-	7e+0	At4g37409	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.2648.1.A1_at	AY104745.1	hypothetical protein LOC100216957	-	3e-3	At4g26740	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.97	Zm.2652.1.A1_at	AW066710	-	-	1e+1	At5g18020	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.3866.1.S1_at	CK370021	D-amino acid oxidase	-	3e+0	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.5486.1.S1_at, orthologous to the query gene, Zm.16350.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	PtpAffx.5486.1.S1_at	At2g20930	hypothetical protein	-	1e-32	At2g20930	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.12697.1.S1_at	At2g20930	hypothetical protein	-	1e-1	At3g26340	20S proteasome beta subunit E, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.50674.1.A1_a_at	At2g20930	hypothetical protein	-	3e-51	At2g25950	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.21786.1.S1_at	At2g20930	hypothetical protein	-	3e-27	At5g66410	PLP3b (Phosducin-like protein 3 homolog)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.2608.1.S1_s_at	At2g20930	hypothetical protein	-	7e-5	At1g64220	TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.7256.1.S1_at	At2g20930	-	-	2e-90	At1g12910	ATAN11 (ANTHOCYANIN11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage