Co-expression analysis

Gene ID	Zm.16350.1.S1_at
Gene name	hypothetical protein LOC100273959
Homology with Arabidopsis	Similar to At2g20930: - (HF=6e-31)
Module size	6 genes
NF	0.58
%ile	77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.16350.1.S1_at	CF349260	hypothetical protein LOC100273959	-	6e-31	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.2653.1.A1_at	BM073552	-	-	7e+0	At4g37409	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.2648.1.A1_at	AY104745.1	hypothetical protein LOC100216957	-	3e-3	At4g26740	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.97	Zm.2652.1.A1_at	AW066710	-	-	1e+1	At5g18020	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.3866.1.S1_at	CK370021	D-amino acid oxidase	-	3e+0	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the soybean gene, Gma.16382.1.S1_at, orthologous to the query gene, Zm.16350.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	80.7	Gma.16382.1.S1_at	At2g20930	-	-	2e-61	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.58	78.8	Gma.4016.1.S1_at	At2g20930	-	-	6e-9	At4g30480	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	Gma.10966.1.S1_at	At2g20930	-	-	8e-130	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.5401.1.S1_s_at	At2g20930	-	-	2e-1	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.49	68.3	GmaAffx.10026.1.S1_at	At2g20930	-	-	3e-19	At5g43010	RPT4A	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.10799.1.S1_at	At2g20930	-	-	4e-96	At4g26100	CK1 (CASEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.17539.1.S1_at	At2g20930	proteasome IOTA subunit	-	2e-87	At2g05840	PAA2 (20S PROTEASOME SUBUNIT PAA2)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.1793.1.S1_x_at	At2g20930	-	-	4e-2	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.2259.1.S1_at	At2g20930	-	-	3e-83	At1g16470	PAB1 (PROTEASOME SUBUNIT PAB1)	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.17906.1.S1_s_at	At2g20930	-	-	2e-11	At2g20280	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.16923.1.A1_s_at	At2g20930	-	-	5e-5	At2g46505	SDH4	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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