CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.16350.1.S1_at

Gene name hypothetical protein LOC100273959
Homology with Arabidopsis Similar to At2g20930: - (HF=6e-31)

Module size 6 genes

NF 0.58

%ile 77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 0.97 Zm.16350.1.S1_at CF349260 hypothetical protein LOC100273959 - 6e-31 At2g20930 - O.I. H.G. S.X.
0.67 85.8 0.98 Zm.2653.1.A1_at BM073552 - - 7e+0 At4g37409 unknown protein O.I. H.G. S.X.
0.60 77.8 0.97 Zm.2648.1.A1_at AY104745.1 hypothetical protein LOC100216957 - 3e-3 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) O.I. H.G. S.X.
0.59 76.1 0.97 Zm.2652.1.A1_at AW066710 - - 1e+1 At5g18020 auxin-responsive protein, putative O.I. H.G. S.X.
0.50 65.7 0.98 Zm.3866.1.S1_at CK370021 D-amino acid oxidase - 3e+0 At1g51760 IAR3 (IAA-ALANINE RESISTANT 3) O.I. H.G. S.X.
0.36 41.3 0.97 Zm.11837.1.A1_at BM381140 hypothetical protein LOC100275424 - 1e+0 At4g16380 metal ion binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.1 98.0 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5 97.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7 97.2 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4 94.9 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g20930, orthologous to the query gene, Zm.16350.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g20930 816627 - F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP O.I. H.G. S.X.
0.46 59.8 At2g28430 817391 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.43 55.3 At2g03680 814896 SPR1 (SPIRAL1) The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle. O.I. H.G. S.X.
0.40 50.8 At3g57785 824948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PFM O.I. H.G. S.X.
0.39 48.4 At1g48170 841236 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. H.G. S.X.
0.38 46.7 At3g03070 821133 NADH-ubiquinone oxidoreductase-related F:unknown;P:unknown;C:mitochondrion;MFPO O.I. H.G. S.X.
0.35 41.6 At5g59880 836110 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) Encodes actin depolymerizing factor 3 (ADF3). O.I. H.G. S.X.
0.34 39.8 At2g44620 819070 MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1) Encodes a member of the mitochondrial acyl carrier protein (ACP) family. As part of the mitochondrial matrix, it is likely to be involved in fatty acid or lipoic acid biogenesis. Its acylated form is predominantly present in the mitochondrial membrane while the non-acylated form is soluble. O.I. H.G. S.X.
0.34 39.8 At1g15370 838106 - F:molecular_function unknown;P:transport;C:unknown;POF O.I. H.G. S.X.
0.30 32.1 At4g22310 828326 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MFPO O.I. H.G. S.X.
0.30 32.1 At2g47170 819330 ARF1A1C Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. O.I. H.G. S.X.
0.30 32.1 At5g20500 832172 glutaredoxin, putative F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;BOPMFVA O.I. H.G. S.X.
0.29 30.3 At2g19790 816498 clathrin adaptor complex small chain family protein F:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MOFP O.I. H.G. S.X.
0.28 30.3 At3g12290 820409 tetrahydrofolate dehydrogenase/cyclohydrolase, putative F:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;OBMFPA O.I. H.G. S.X.
0.27 26.2 At3g12260 820406 complex 1 family protein / LVR family protein F:catalytic activity;P:unknown;C:mitochondrion, respiratory chain complex I, membrane;MFPO O.I. H.G. S.X.
0.25 22.6 At2g21600 816698 ATRER1B Key player of retrieval of ER membrane proteins O.I. H.G. S.X.
0.22 17.5 At5g11810 831054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.16 8.8 At4g15520 827225 tRNA/rRNA methyltransferase (SpoU) family protein F:RNA binding, RNA methyltransferase activity;P:RNA processing;C:cellular_component unknown;BOMPA O.I. H.G. S.X.
0.15 7.8 At3g05280 819692 integral membrane Yip1 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage