Co-expression analysis

Gene ID	Zm.16305.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g15640: cytochrome c oxidase family protein (HF=9e-15)
Module size	14 genes
NF	0.49
%ile	62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	69.8	0.97	Zm.16305.1.A1_at	CA398833	-	-	9e-15	At3g15640	cytochrome c oxidase family protein	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.98	Zm.16854.1.S1_at	CF674957	hypothetical protein LOC100273231	-	1e-1	At3g18220	phosphatidic acid phosphatase family protein / PAP2 family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.98	Zm.2529.1.A1_s_at	BQ539485	-	-	1e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.300.1.A1_at	AY107888.1	polyamine oxidase1	-	1e+1	At5g15600	SP1L4 (SPIRAL1-LIKE4)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.253.1.A1_at	CF020390	hypothetical protein LOC100279053	-	5e+0	At5g29807	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.97	Zm.14028.3.A1_at	BG841009	hypothetical protein LOC100192735	-	8e-6	At1g50490	UBC20 (ubiquitin-conjugating enzyme 20)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.8709.1.A1_at	CF624906	-	-	6e-6	At1g01650	aspartic-type endopeptidase/ peptidase	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.5352.1.A1_at	BU079827	zinc finger, C3HC4 type family protein /// 3-isopropylmalate dehydrogenase 2	-	3e-53	At5g14200	3-isopropylmalate dehydrogenase, chloroplast, putative	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.2530.1.A1_at	CF637153	-	-	7e-5	At1g58350	ZW18	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	Zm.14695.1.S1_at	CB334472	hypothetical protein LOC100217075	-	3e+0	At1g09390	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.6475.3.S1_at	AI737301	PHD finger protein	-	3e-18	At2g02470	AL6 (ALFIN-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.4048.1.S1_at	AW091504	ras-related protein ARA-4	-	5e-35	At2g43130	ARA4	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.18253.1.A1_at	CN844972	hypothetical protein LOC100279741	-	5e-21	At3g61790	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.6685.1.A1_at	BM348182	-	-	7e+0	At5g22250	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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