Co-expression analysis

Gene ID Zm.16289.1.A1_at
Gene name hypothetical protein LOC100217119
Homology with ArabidopsisSimilar to At4g12110: SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1) (HF=2e-2)
Module size 7 genes
NF 0.48
%ile 61.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.96Zm.16289.1.A1_atBM337131hypothetical protein LOC100217119-2e-2At4g12110SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)O.I.H.G.S.X.
0.5775.10.96Zm.2895.7.A1_atBQ164476hypothetical protein LOC100275739-5e-18At2g4020560S ribosomal protein L41 (RPL41C)O.I.H.G.S.X.
0.5775.10.96Zm.16644.1.S1_x_atCF602545hypothetical protein LOC100191653-4e-8At5g66080protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.4048.50.96Zm.19352.1.S1_atCO532449--2e-16At5g49990xanthine/uracil permease family proteinO.I.H.G.S.X.
0.4048.50.97Zm.2617.1.A1_atAI964629--9e+0At4g34190SEP1 (STRESS ENHANCED PROTEIN 1)O.I.H.G.S.X.
0.2928.10.97Zm.5922.1.A1_atCN844887DNA-binding protein S1FA2-2e+0At1g16250kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.2521.30.97Zm.13811.1.A1_atAY104705.1--2e+0At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.098.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320441protocol: mRNA - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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