Co-expression analysis

Gene ID Zm.16281.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g10980: histone H3 (HF=2e-18)
Module size 16 genes
NF 0.49
%ile 63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.10.95Zm.16281.1.S1_atBM378604--2e-18At5g10980histone H3O.I.H.G.S.X.
0.6785.80.97Zm.18270.1.A1_atCA399376Hypothetical protein LOC100194036-3e-6At4g37200HCF164O.I.H.G.S.X.
0.6582.10.97Zm.554.1.A1_atCF630610glutathione transferase28-1e-1At1g17170ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)O.I.H.G.S.X.
0.6381.10.97Zm.11624.1.A1_atCF637935thioredoxin H-type-3e-1At3g51030ATTRX1O.I.H.G.S.X.
0.6381.10.97Zm.10174.1.S1_atAY111125.1--4e+0At2g47370-O.I.H.G.S.X.
0.6179.50.97Zm.6874.2.S1_a_atCF637577hypothetical protein LOC100193230-3e-3At2g45430DNA-binding protein-relatedO.I.H.G.S.X.
0.5674.40.98Zm.14125.1.A1_atCO533246hypothetical protein LOC100273725-3e-4At3g51280male sterility MS5, putativeO.I.H.G.S.X.
0.5571.60.97Zm.14428.1.S1_atAY106109.1cyclin-L2-4e+0At4g27410RD26 (RESPONSIVE TO DESICCATION 26)O.I.H.G.S.X.
0.5065.70.97Zm.13249.2.A1_x_atCF012746--1e+0At1g35255unknown proteinO.I.H.G.S.X.
0.4861.30.97Zm.4090.1.A1_atAI834563--4e-1At2g41080pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4759.90.97Zm.1033.1.A1_atBE640167--1e+0At3g50780-O.I.H.G.S.X.
0.4352.80.97Zm.5372.1.S1_atAW000380secondary cell wall-related glycosyltransferase family 8-5e-15At3g18660PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1)O.I.H.G.S.X.
0.3641.30.97Zm.2715.1.A1_atAW066985--5e+0At4g12990unknown proteinO.I.H.G.S.X.
0.3233.40.97Zm.10187.1.S1_atCF634502hypothetical protein LOC100216724-9e-4At5g51460ATTPPAO.I.H.G.S.X.
0.3131.60.97Zm.17858.1.S1_atAY111541.1hypothetical protein AY111541-2e+0At3g53620AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)O.I.H.G.S.X.
0.2724.60.97Zm.241.1.S1_atCK786973Superoxide dismutase4-1e-13At1g08830CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.497.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM258185Oh43 11-day seedling aerial tissue biological replicate 2GSE10236Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosisLink to GEO
3.194.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM258194Oh43 11-day seedling aerial tissue biological replicate 3GSE10236Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage