Co-expression analysis

Gene ID	Zm.16259.2.A1_x_at
Gene name	hypothetical protein LOC100273269
Homology with Arabidopsis	Similar to At4g27230: HTA2 (histone H2A) (HF=4e-7)
Module size	29 genes
NF	0.77
%ile	96.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	92.8	0.96	Zm.16259.2.A1_x_at	CD951359	hypothetical protein LOC100273269	-	4e-7	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.87	96.4	0.97	Zm.6701.1.A1_at	AI619212	glutaredoxin 2	-	9e-2	At4g08280	-	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.97	Zm.4020.1.A1_at	CF637232	hypothetical protein LOC100191912	-	2e-17	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.84	95.8	0.97	Zm.6638.1.A1_at	AI619165	esterase	-	4e-1	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.5480.1.A1_at	AY103756.1	glycine-rich RNA-binding protein 7	-	5e-1	At2g46000	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.97	Zm.18363.1.S1_at	CO529135	hypothetical protein LOC100194297	-	8e-13	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.98	Zm.1019.1.A1_at	AW288674	actin-depolymerizing factor 5	-	2e-19	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.98	Zm.8925.1.A1_at	BM381305	-	-	2e+0	At5g50360	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.97	Zm.4027.1.S1_a_at	AY104092.1	hypothetical protein LOC100194227 /// hypothetical protein LOC100272558 /// endo-1,3;1,4-beta-D-glucanase	-	3e+0	At2g02030	F-box family protein	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.98	Zm.1405.1.S1_at	BF729113	-	-	3e+0	At4g32080	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	Zm.5491.1.A1_at	AY111486.1	-	-	1e-5	At2g37050	kinase	O.I.	H.G.	S.X.	Please select
0.79	92.8	0.97	Zm.9184.1.A1_at	BM267135	-	-	4e-1	At3g51440	strictosidine synthase family protein	O.I.	H.G.	S.X.	Please select
0.79	92.8	0.98	Zm.7368.1.S1_at	BM078103	ERF/AP2 domain containing transcription factor	-	5e-2	At3g57600	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.78	92.5	0.97	Zm.1012.1.S1_at	BM080394	-	-	3e-3	At3g24210	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	Zm.8950.1.A1_at	AY109015.1	-	-	1e-17	At2g18230	AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.97	Zm.7275.1.A1_at	BM336395	hypothetical protein LOC100275154	-	8e-2	At5g58220	TTL (Transthyretin-Like protein)	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.98	Zm.4615.2.A1_at	AI714747	-	-	2e-1	At1g58420	-	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.97	Zm.9070.1.A1_at	BM340716	drought-induced protein 1	-	5e-1	At2g37970	SOUL-1	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.97	Zm.7437.1.A1_at	BM078398	-	-	1e+0	At3g58100	PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.97	Zm.5458.1.A1_at	AY105574.1	starch synthase IIc precursor	-	2e+0	At3g01940	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	88.6	0.97	Zm.737.1.A1_at	D45403.1	cysteine protease	-	2e-23	At5g60360	AALP (Arabidopsis aleurain-like protease)	O.I.	H.G.	S.X.	Please select
0.72	88.6	0.97	Zm.7585.1.S1_at	BQ539058	hypothetical protein LOC100272281	-	2e+0	At5g66980	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	Zm.15179.1.A1_at	BM340732	hypothetical protein LOC100278013	-	3e-1	At5g42930	triacylglycerol lipase	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.96	Zm.6009.1.A1_s_at	BM348378	hypothetical protein LOC100274708	-	2e+0	At1g74730	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	86.1	0.98	Zm.5721.1.A1_a_at	AY105083.1	Hypothetical protein LOC100191423	-	9e-2	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.97	Zm.6064.1.S1_at	CF020510	low-molecular-weight cysteine-rich protein LCR70	-	4e+0	At4g04330	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.13484.1.A1_at	AY108906.1	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.98	Zm.5818.1.A1_at	AY105653.1	-	-	4e-7	At4g00570	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.19026.1.A1_at	AI619121	hypothetical protein LOC100193145	-	2e-5	At3g20250	APUM5 (Arabidopsis Pumilio 5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.1	94.3	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.1	94.3	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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