Co-expression analysis

Gene ID Zm.16259.1.A1_x_at
Gene name hypothetical protein LOC100273269
Homology with ArabidopsisSimilar to At4g27230: HTA2 (histone H2A) (HF=1e-6)
Module size 6 genes
NF 0.33
%ile 32.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.99Zm.16259.1.A1_x_atBQ539455hypothetical protein LOC100273269-1e-6At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.4759.90.99Zm.6113.1.A1_atCF630251--7e-2At4g22745MBD1O.I.H.G.S.X.
0.3641.30.99Zm.10656.1.A1_atBQ538423hypothetical protein LOC100216802-3e+0At4g25570ACYB-2O.I.H.G.S.X.
0.2828.10.99Zm.2979.1.S1_atBG841486trafficking protein particle complex protein 2-2e-12At1g80500-O.I.H.G.S.X.
0.2622.70.99Zm.6787.1.A1_a_atAF277454.1hypothetical protein LOC100274407 /// UMP synthase-2e-17At3g54470uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)O.I.H.G.S.X.
0.2014.20.98Zm.13232.1.S1_atCA452744tyrosine/DOPA decarboxylase 2-9e-1At2g04630NRPB6BO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6179.50.98Zm.16524.8.S1_atAI665572--3e-3At1g02405proline-rich family proteinO.I.H.G.S.X.
0.5065.70.98Zm.17919.1.A1_atBG840190hypothetical protein LOC100280335-2e-2At1g76490HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)O.I.H.G.S.X.
0.4455.70.97Zm.14530.1.A1_atAY179882.1zea floricaula/leafy1-8e-13At5g61850LFY (LEAFY)O.I.H.G.S.X.
0.4455.70.97Zm.13988.1.S1_atAY103582.1hypothetical protein LOC100279316-4e+0At1g01030NGA3 (NGATHA3)O.I.H.G.S.X.
0.4455.70.99Zm.1662.1.A1_a_atCF626953--6e-1At5g35570unknown proteinO.I.H.G.S.X.
0.4251.30.97Zm.5322.1.A1_a_atAY103724.1hypothetical protein LOC100273032 /// hypothetical protein LOC100274445-9e-152At5g19990RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)O.I.H.G.S.X.
0.4251.30.98Zm.6482.1.A1_atAY111229.1hypothetical protein LOC100216804-5e-1At2g46050pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4251.30.98Zm.7120.1.S1_a_atAY105061.1hypothetical protein LOC100193616-2e-6At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.
0.4048.50.98Zm.3215.1.A1_atBG842743hypothetical protein LOC100276107-5e-1At4g25200ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)O.I.H.G.S.X.
0.4048.50.98Zm.3277.1.A1_atCO520691hypothetical protein LOC100193700-2e-8At1g75220integral membrane protein, putativeO.I.H.G.S.X.
0.4048.50.99Zm.3743.2.A1_a_atCF624095hypothetical protein LOC100274177-2e+0At5g04045Expressed proteinO.I.H.G.S.X.
0.4048.50.99Zm.625.1.S1_atBG841424MAP kinase phosphatase-1e-1At1g44020DC1 domain-containing proteinO.I.H.G.S.X.
0.3844.20.99Zm.8842.1.A1_atBM075870hypothetical protein LOC100193075-1e+0At2g40670ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)O.I.H.G.S.X.
0.3641.30.98Zm.1703.1.S1_atCO522762M27 protein-6e-9At2g45650AGL6 (AGAMOUS-LIKE 6)O.I.H.G.S.X.
0.3641.30.99Zm.6244.2.S1_atAI677548--8e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)O.I.H.G.S.X.
0.3538.90.98Zm.250.1.S1_atCF007330basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097-5e+0At3g06000leucine-rich repeat family proteinO.I.H.G.S.X.
0.3336.00.97Zm.128.1.S1_atX69152.1octopine synthase binding factor3-2e-1At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)O.I.H.G.S.X.
0.3336.00.98Zm.16534.1.S1_atCF602562--8e+0At5g04350self-incompatibility protein-relatedO.I.H.G.S.X.
0.3336.00.99Zm.3743.2.S1_atAY109746.1--2e+0At5g04045Expressed proteinO.I.H.G.S.X.
0.3131.60.98Zm.6506.1.A1_a_atAI714910replication protein A 70 kDa DNA-binding subunit-1e-10At5g08020RPA70B (RPA70-KDA SUBUNIT B)O.I.H.G.S.X.
0.3131.60.99Zm.17310.1.A1_atCK368488--7e+0At5g42000ORMDL family proteinO.I.H.G.S.X.
0.2928.10.98Zm.16355.1.A1_atCF349220--2e-4At1g59740proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.
0.2928.10.98Zm.1449.2.S1_a_atBM382632early drought induced protein-3e-1At1g45248-O.I.H.G.S.X.
0.2928.10.98Zm.12804.1.A1_atCA399162--2e-12At1g24190SNL3 (SIN3-LIKE 3)O.I.H.G.S.X.
0.2928.10.98Zm.7328.1.S1_atCF628905kinesin-like protein1-1e-13At4g24170kinesin motor family proteinO.I.H.G.S.X.
0.2928.10.99Zm.14473.1.A1_a_atAI665307--1e-10At2g23350PAB4 (POLY(A) BINDING PROTEIN 4)O.I.H.G.S.X.
0.2928.10.99Zm.12805.1.A1_atCA399164--1e+0At2g03550hydrolaseO.I.H.G.S.X.
0.2828.10.98Zm.16513.7.A1_atCA405325hypothetical protein LOC100191561-0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.2724.60.97Zm.14504.1.A1_atAY107583.1hypothetical protein LOC100273087-7e+0At3g20395protein binding / zinc ion bindingO.I.H.G.S.X.
0.2521.30.99Zm.7387.1.A1_atBM078157--2e+1At5g18403-O.I.H.G.S.X.
0.2521.30.99Zm.393.1.S1_atU41466.1glossy15-3e-7At5g67180AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.2521.30.99Zm.3938.1.A1_atCB350990--2e+0At5g63310NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.298.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM205420Mo17 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
5.497.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM205424Mo17 19 DAP endosperm tissue biological replicate 2GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
4.696.4GSM205431Mo17 19 DAP endosperm tissue biological replicate 3GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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