CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.16259.1.A1_x_at

Gene name hypothetical protein LOC100273269
Homology with Arabidopsis Similar to At4g27230: HTA2 (histone H2A) (HF=1e-6)

Module size 6 genes

NF 0.33

%ile 32.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 0.99 Zm.16259.1.A1_x_at BQ539455 hypothetical protein LOC100273269 - 1e-6 At4g27230 HTA2 (histone H2A) O.I. H.G. S.X.
0.47 59.9 0.99 Zm.6113.1.A1_at CF630251 - - 7e-2 At4g22745 MBD1 O.I. H.G. S.X.
0.36 41.3 0.99 Zm.10656.1.A1_at BQ538423 hypothetical protein LOC100216802 - 3e+0 At4g25570 ACYB-2 O.I. H.G. S.X.
0.28 28.1 0.99 Zm.2979.1.S1_at BG841486 trafficking protein particle complex protein 2 - 2e-12 At1g80500 - O.I. H.G. S.X.
0.26 22.7 0.99 Zm.6787.1.A1_a_at AF277454.1 hypothetical protein LOC100274407 /// UMP synthase - 2e-17 At3g54470 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) O.I. H.G. S.X.
0.20 14.2 0.98 Zm.13232.1.S1_at CA452744 tyrosine/DOPA decarboxylase 2 - 9e-1 At2g04630 NRPB6B O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	92.1	0.99	Zm.16259.1.A1_x_at	BQ539455	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.
0.47	59.9	0.99	Zm.6113.1.A1_at	CF630251	-	-	7e-2	At4g22745	MBD1	O.I.	H.G.	S.X.
0.36	41.3	0.99	Zm.10656.1.A1_at	BQ538423	hypothetical protein LOC100216802	-	3e+0	At4g25570	ACYB-2	O.I.	H.G.	S.X.
0.28	28.1	0.99	Zm.2979.1.S1_at	BG841486	trafficking protein particle complex protein 2	-	2e-12	At1g80500	-	O.I.	H.G.	S.X.
0.26	22.7	0.99	Zm.6787.1.A1_a_at	AF277454.1	hypothetical protein LOC100274407 /// UMP synthase	-	2e-17	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	O.I.	H.G.	S.X.
0.20	14.2	0.98	Zm.13232.1.S1_at	CA452744	tyrosine/DOPA decarboxylase 2	-	9e-1	At2g04630	NRPB6B	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.2 98.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4 97.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8 97.6 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3 97.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5 97.1 GSM205420 Mo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.4 97.0 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0 96.7 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.6 96.4 GSM205431 Mo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
9.2	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM205420	Mo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.4	97.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.6	96.4	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.128686.3.A1_at, orthologous to the query gene, Zm.16259.1.A1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.1 TaAffx.128686.3.A1_at At4g27230 - - 3e-1 At4g27230 HTA2 (histone H2A) O.I. H.G. S.X.
0.55 76.8 Ta.7378.37.S1_at At4g27230 - - 3e-20 At1g07790 HTB1 O.I. H.G. S.X.
0.54 75.5 TaAffx.132315.3.S1_x_at At4g27230 - - 9e-14 At5g59690 histone H4 O.I. H.G. S.X.
0.51 73.0 Ta.7378.37.S1_x_at At4g27230 - - 3e-20 At1g07790 HTB1 O.I. H.G. S.X.
0.50 72.4 Ta.7378.27.S1_x_at At4g27230 - - 3e-20 At1g07790 HTB1 O.I. H.G. S.X.
0.49 69.7 Ta.7378.21.S1_at At4g27230 Histone H2B - 6e-18 At1g07790 HTB1 O.I. H.G. S.X.
0.49 69.7 Ta.7378.27.S1_at At4g27230 - - 3e-20 At1g07790 HTB1 O.I. H.G. S.X.
0.48 69.0 Ta.7378.12.S1_x_at At4g27230 - - 5e-26 At1g07790 HTB1 O.I. H.G. S.X.
0.47 67.9 Ta.2876.2.A1_at At4g27230 - - 6e-12 At1g07370 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) O.I. H.G. S.X.
0.46 66.8 Ta.7378.2.S1_x_at At4g27230 Protein H2B-8 - 4e-20 At1g07790 HTB1 O.I. H.G. S.X.
0.46 66.8 Ta.6897.1.S1_at At4g27230 - - 6e-19 At5g38110 ASF1B (ANTI- SILENCING FUNCTION 1B) O.I. H.G. S.X.
0.43 62.2 Ta.7378.18.S1_at At4g27230 - - 5e-25 At1g07790 HTB1 O.I. H.G. S.X.
0.43 62.2 Ta.10329.43.S1_at At4g27230 - - 9e-20 At5g59970 histone H4 O.I. H.G. S.X.
0.43 62.2 Ta.10329.24.S1_at At4g27230 - - 1e-19 At5g59690 histone H4 O.I. H.G. S.X.
0.41 59.6 Ta.14018.2.S1_x_at At4g27230 - - 5e-21 At3g11830 chaperonin, putative O.I. H.G. S.X.
0.40 58.4 Ta.10329.42.S1_at At4g27230 - - 1e-16 At5g59690 histone H4 O.I. H.G. S.X.
0.40 58.4 TaAffx.128418.50.S1_at At4g27230 - - 3e-4 At4g27230 HTA2 (histone H2A) O.I. H.G. S.X.
0.40 58.4 Ta.7378.18.S1_x_at At4g27230 - - 5e-25 At1g07790 HTB1 O.I. H.G. S.X.
0.38 54.7 Ta.7378.1.S1_at At4g27230 protein H2B-8 - 3e-20 At1g07790 HTB1 O.I. H.G. S.X.
0.37 53.0 TaAffx.5129.1.S1_at At4g27230 - - 5e+0 At1g38790 unknown protein O.I. H.G. S.X.
0.35 49.8 Ta.28770.1.S1_x_at At4g27230 - - 5e-39 At4g25630 FIB2 (FIBRILLARIN 2) O.I. H.G. S.X.
0.33 46.9 Ta.28495.1.S1_x_at At4g27230 - - 2e-33 At1g09200 histone H3 O.I. H.G. S.X.
0.31 42.7 Ta.7378.1.S1_x_at At4g27230 protein H2B-8 - 3e-20 At1g07790 HTB1 O.I. H.G. S.X.
0.30 40.9 Ta.6455.1.S1_x_at At4g27230 - - 7e-2 At5g66460 (1-4)-beta-mannan endohydrolase, putative O.I. H.G. S.X.
0.30 40.9 Ta.7378.34.S1_at At4g27230 - - 5e-13 At1g07790 HTB1 O.I. H.G. S.X.
0.17 19.8 Ta.14549.1.S1_at At4g27230 - - 1e-29 At3g53020 STV1 (SHORT VALVE1) O.I. H.G. S.X.
0.15 17.1 Ta.1833.1.S1_s_at At4g27230 - - 1e-1 At3g21700 SGP2 O.I. H.G. S.X.
0.14 15.8 Ta.3092.2.S1_x_at At4g27230 - - 1e+1 At3g04920 40S ribosomal protein S24 (RPS24A) O.I. H.G. S.X.
0.13 14.6 Ta.11347.1.S1_a_at At4g27230 - - 4e-3 At5g14050 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.11 12.4 Ta.9231.3.S1_x_at At4g27230 - - 1e-8 At2g19750 40S ribosomal protein S30 (RPS30A) O.I. H.G. S.X.
0.10 11.3 TaAffx.51774.1.S1_at At4g27230 - - 2e-5 At5g20160 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.95	99.1	TaAffx.128686.3.A1_at	At4g27230	-	-	3e-1	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.
0.55	76.8	Ta.7378.37.S1_at	At4g27230	-	-	3e-20	At1g07790	HTB1	O.I.	H.G.	S.X.
0.54	75.5	TaAffx.132315.3.S1_x_at	At4g27230	-	-	9e-14	At5g59690	histone H4	O.I.	H.G.	S.X.
0.51	73.0	Ta.7378.37.S1_x_at	At4g27230	-	-	3e-20	At1g07790	HTB1	O.I.	H.G.	S.X.
0.50	72.4	Ta.7378.27.S1_x_at	At4g27230	-	-	3e-20	At1g07790	HTB1	O.I.	H.G.	S.X.
0.49	69.7	Ta.7378.21.S1_at	At4g27230	Histone H2B	-	6e-18	At1g07790	HTB1	O.I.	H.G.	S.X.
0.49	69.7	Ta.7378.27.S1_at	At4g27230	-	-	3e-20	At1g07790	HTB1	O.I.	H.G.	S.X.
0.48	69.0	Ta.7378.12.S1_x_at	At4g27230	-	-	5e-26	At1g07790	HTB1	O.I.	H.G.	S.X.
0.47	67.9	Ta.2876.2.A1_at	At4g27230	-	-	6e-12	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	O.I.	H.G.	S.X.
0.46	66.8	Ta.7378.2.S1_x_at	At4g27230	Protein H2B-8	-	4e-20	At1g07790	HTB1	O.I.	H.G.	S.X.
0.46	66.8	Ta.6897.1.S1_at	At4g27230	-	-	6e-19	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	O.I.	H.G.	S.X.
0.43	62.2	Ta.7378.18.S1_at	At4g27230	-	-	5e-25	At1g07790	HTB1	O.I.	H.G.	S.X.
0.43	62.2	Ta.10329.43.S1_at	At4g27230	-	-	9e-20	At5g59970	histone H4	O.I.	H.G.	S.X.
0.43	62.2	Ta.10329.24.S1_at	At4g27230	-	-	1e-19	At5g59690	histone H4	O.I.	H.G.	S.X.
0.41	59.6	Ta.14018.2.S1_x_at	At4g27230	-	-	5e-21	At3g11830	chaperonin, putative	O.I.	H.G.	S.X.
0.40	58.4	Ta.10329.42.S1_at	At4g27230	-	-	1e-16	At5g59690	histone H4	O.I.	H.G.	S.X.
0.40	58.4	TaAffx.128418.50.S1_at	At4g27230	-	-	3e-4	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.
0.40	58.4	Ta.7378.18.S1_x_at	At4g27230	-	-	5e-25	At1g07790	HTB1	O.I.	H.G.	S.X.
0.38	54.7	Ta.7378.1.S1_at	At4g27230	protein H2B-8	-	3e-20	At1g07790	HTB1	O.I.	H.G.	S.X.
0.37	53.0	TaAffx.5129.1.S1_at	At4g27230	-	-	5e+0	At1g38790	unknown protein	O.I.	H.G.	S.X.
0.35	49.8	Ta.28770.1.S1_x_at	At4g27230	-	-	5e-39	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.
0.33	46.9	Ta.28495.1.S1_x_at	At4g27230	-	-	2e-33	At1g09200	histone H3	O.I.	H.G.	S.X.
0.31	42.7	Ta.7378.1.S1_x_at	At4g27230	protein H2B-8	-	3e-20	At1g07790	HTB1	O.I.	H.G.	S.X.
0.30	40.9	Ta.6455.1.S1_x_at	At4g27230	-	-	7e-2	At5g66460	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.
0.30	40.9	Ta.7378.34.S1_at	At4g27230	-	-	5e-13	At1g07790	HTB1	O.I.	H.G.	S.X.
0.17	19.8	Ta.14549.1.S1_at	At4g27230	-	-	1e-29	At3g53020	STV1 (SHORT VALVE1)	O.I.	H.G.	S.X.
0.15	17.1	Ta.1833.1.S1_s_at	At4g27230	-	-	1e-1	At3g21700	SGP2	O.I.	H.G.	S.X.
0.14	15.8	Ta.3092.2.S1_x_at	At4g27230	-	-	1e+1	At3g04920	40S ribosomal protein S24 (RPS24A)	O.I.	H.G.	S.X.
0.13	14.6	Ta.11347.1.S1_a_at	At4g27230	-	-	4e-3	At5g14050	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.11	12.4	Ta.9231.3.S1_x_at	At4g27230	-	-	1e-8	At2g19750	40S ribosomal protein S30 (RPS30A)	O.I.	H.G.	S.X.
0.10	11.3	TaAffx.51774.1.S1_at	At4g27230	-	-	2e-5	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.16259.1.A1_x_at
Gene name	hypothetical protein LOC100273269
Homology with Arabidopsis	Similar to At4g27230: HTA2 (histone H2A) (HF=1e-6)
Module size	6 genes
NF	0.33
%ile	32.0

Co-expression analysis

Gene ID Zm.16259.1.A1_x_at Gene name hypothetical protein LOC100273269 Homology with ArabidopsisSimilar to At4g27230: HTA2 (histone H2A) (HF=1e-6) Module size 6 genes NF 0.33 %ile 32.0

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_vinifera

Gene ID Zm.16259.1.A1_x_at

Gene name hypothetical protein LOC100273269
Homology with Arabidopsis Similar to At4g27230: HTA2 (histone H2A) (HF=1e-6)

Module size 6 genes

NF 0.33

%ile 32.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera