Co-expression analysis

Gene ID Zm.16259.1.A1_x_at
Gene name hypothetical protein LOC100273269
Homology with ArabidopsisSimilar to At4g27230: HTA2 (histone H2A) (HF=1e-6)
Module size 6 genes
NF 0.33
%ile 32.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.99Zm.16259.1.A1_x_atBQ539455hypothetical protein LOC100273269-1e-6At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.4759.90.99Zm.6113.1.A1_atCF630251--7e-2At4g22745MBD1O.I.H.G.S.X.
0.3641.30.99Zm.10656.1.A1_atBQ538423hypothetical protein LOC100216802-3e+0At4g25570ACYB-2O.I.H.G.S.X.
0.2828.10.99Zm.2979.1.S1_atBG841486trafficking protein particle complex protein 2-2e-12At1g80500-O.I.H.G.S.X.
0.2622.70.99Zm.6787.1.A1_a_atAF277454.1hypothetical protein LOC100274407 /// UMP synthase-2e-17At3g54470uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)O.I.H.G.S.X.
0.2014.20.98Zm.13232.1.S1_atCA452744tyrosine/DOPA decarboxylase 2-9e-1At2g04630NRPB6BO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.298.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM205420Mo17 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
5.497.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM205424Mo17 19 DAP endosperm tissue biological replicate 2GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
4.696.4GSM205431Mo17 19 DAP endosperm tissue biological replicate 3GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.24431.1.A1_at, orthologous to the query gene, Zm.16259.1.A1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9299.3PtpAffx.24431.1.A1_atAt4g27230histone 2-1e-34At1g08880H2AXAO.I.H.G.S.X.
0.6388.1PtpAffx.1058.3.S1_s_atAt4g27230hypothetical protein-7e-53At2g0125060S ribosomal protein L7 (RPL7B)O.I.H.G.S.X.
0.5884.2Ptp.1544.1.S1_x_atAt4g27230hypothetical protein-6e-128At1g43170ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)O.I.H.G.S.X.
0.5884.2Ptp.5666.1.S1_s_atAt4g27230hypothetical protein-5e-4At3g2223060S ribosomal protein L27 (RPL27B)O.I.H.G.S.X.
0.5178.9Ptp.1555.1.S1_atAt4g27230hypothetical protein-7e-31At3g1095060S ribosomal protein L37a (RPL37aB)O.I.H.G.S.X.
0.5178.9PtpAffx.653.16.S1_s_atAt4g27230hypothetical protein-7e-49At3g25520ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)O.I.H.G.S.X.
0.4975.7Ptp.4451.1.S1_x_atAt4g27230hypothetical protein-1e-19At1g0707060S ribosomal protein L35a (RPL35aA)O.I.H.G.S.X.
0.4975.7PtpAffx.90995.1.S1_s_atAt4g27230hypothetical protein-2e-4At5g20160ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.4975.7Ptp.5591.1.S1_s_atAt4g27230hypothetical protein-3e-3At1g5868440S ribosomal protein S2, putativeO.I.H.G.S.X.
0.4774.6Ptp.176.2.S1_a_atAt4g27230hypothetical protein-5e-28At4g31700RPS6 (RIBOSOMAL PROTEIN S6)O.I.H.G.S.X.
0.4774.6PtpAffx.25979.1.S1_atAt4g27230hypothetical protein-3e-12At4g16630DEAD/DEAH box helicase, putative (RH28)O.I.H.G.S.X.
0.4673.7Ptp.2448.1.S1_atAt4g27230hypothetical protein-5e-57At3g2483060S ribosomal protein L13A (RPL13aB)O.I.H.G.S.X.
0.4673.7Ptp.226.1.S1_atAt4g27230hypothetical protein-7e-78At3g20050ATTCP-1O.I.H.G.S.X.
0.4673.7Ptp.1464.2.S1_x_atAt4g27230--3e-40At2g4761060S ribosomal protein L7A (RPL7aA)O.I.H.G.S.X.
0.4572.3Ptp.652.1.S1_s_atAt4g27230hypothetical protein-2e-76At4g00100ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)O.I.H.G.S.X.
0.4471.9Ptp.798.1.A1_x_atAt4g27230--1e-28At3g4991060S ribosomal protein L26 (RPL26A)O.I.H.G.S.X.
0.4471.9Ptp.5866.1.S1_s_atAt4g27230hypothetical protein-2e-14At1g33140PGY2 (PIGGYBACK2)O.I.H.G.S.X.
0.4369.7PtpAffx.7885.1.S1_atAt4g27230hypothetical protein-2e-24At5g26360chaperonin, putativeO.I.H.G.S.X.
0.4369.7PtpAffx.421.1.A1_atAt4g27230hypothetical protein-7e-28At3g12860nucleolar protein Nop56, putativeO.I.H.G.S.X.
0.4268.6Ptp.5429.2.S1_s_atAt4g27230hypothetical protein-2e-46At3g0484040S ribosomal protein S3A (RPS3aA)O.I.H.G.S.X.
0.4268.6PtpAffx.92178.1.S1_atAt4g27230hypothetical protein-5e-8At1g55900TIM50O.I.H.G.S.X.
0.4268.6Ptp.626.1.S1_a_atAt4g27230hypothetical protein-3e-27At3g05590RPL18 (RIBOSOMAL PROTEIN L18)O.I.H.G.S.X.
0.4067.0Ptp.5545.1.S1_atAt4g27230hypothetical protein-9e-43At5g0287060S ribosomal protein L4/L1 (RPL4D)O.I.H.G.S.X.
0.4067.0Ptp.2403.1.S1_s_atAt4g27230hypothetical protein-1e-14At4g16830nuclear RNA-binding protein (RGGA)O.I.H.G.S.X.
0.3964.6Ptp.2109.1.A1_atAt4g27230--8e-46At3g12390nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeO.I.H.G.S.X.
0.3964.6Ptp.5785.1.S1_s_atAt4g27230hypothetical protein-1e-20At2g34430LHB1B1O.I.H.G.S.X.
0.3863.7Ptp.6762.1.S1_x_atAt4g27230hypothetical protein-2e-33At5g1838040S ribosomal protein S16 (RPS16C)O.I.H.G.S.X.
0.3661.6Ptp.1424.1.S1_s_atAt4g27230hypothetical protein-3e-14At3g2223060S ribosomal protein L27 (RPL27B)O.I.H.G.S.X.
0.3661.6Ptp.6320.1.S1_s_atAt4g27230hypothetical protein-9e-108At4g18730RPL16BO.I.H.G.S.X.
0.3559.7Ptp.5621.1.S1_s_atAt4g27230hypothetical protein-2e-89At3g48930EMB1080 (embryo defective 1080)O.I.H.G.S.X.
0.3559.7PtpAffx.993.2.S1_s_atAt4g27230hypothetical protein-2e-101At3g04400emb2171 (embryo defective 2171)O.I.H.G.S.X.
0.3458.3Ptp.6917.1.A1_s_atAt4g27230hypothetical protein-3e-36At4g2939040S ribosomal protein S30 (RPS30B)O.I.H.G.S.X.
0.3357.5PtpAffx.52104.1.A1_s_atAt4g27230hypothetical protein-2e+0At5g03530RABC2A (RAB GTPASE HOMOLOG C2A)O.I.H.G.S.X.
0.3357.5PtpAffx.43886.1.A1_atAt4g27230hypothetical protein-9e-36At4g02840small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.3153.7Ptp.5838.1.S1_s_atAt4g27230hypothetical protein-1e-44At4g2709060S ribosomal protein L14 (RPL14B)O.I.H.G.S.X.
0.2747.1Ptp.6712.1.S1_atAt4g27230hypothetical protein-0At5g20890chaperonin, putativeO.I.H.G.S.X.
0.2747.1Ptp.5749.1.S1_a_atAt4g27230hypothetical protein-4e-17At1g04510transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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