Co-expression analysis

Gene ID Zm.16259.1.A1_x_at
Gene name hypothetical protein LOC100273269
Homology with ArabidopsisSimilar to At4g27230: HTA2 (histone H2A) (HF=1e-6)
Module size 6 genes
NF 0.33
%ile 32.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.99Zm.16259.1.A1_x_atBQ539455hypothetical protein LOC100273269-1e-6At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.4759.90.99Zm.6113.1.A1_atCF630251--7e-2At4g22745MBD1O.I.H.G.S.X.
0.3641.30.99Zm.10656.1.A1_atBQ538423hypothetical protein LOC100216802-3e+0At4g25570ACYB-2O.I.H.G.S.X.
0.2828.10.99Zm.2979.1.S1_atBG841486trafficking protein particle complex protein 2-2e-12At1g80500-O.I.H.G.S.X.
0.2622.70.99Zm.6787.1.A1_a_atAF277454.1hypothetical protein LOC100274407 /// UMP synthase-2e-17At3g54470uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)O.I.H.G.S.X.
0.2014.20.98Zm.13232.1.S1_atCA452744tyrosine/DOPA decarboxylase 2-9e-1At2g04630NRPB6BO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.298.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM205420Mo17 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
5.497.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM205424Mo17 19 DAP endosperm tissue biological replicate 2GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
4.696.4GSM205431Mo17 19 DAP endosperm tissue biological replicate 3GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.psZS009xF02f_at, orthologous to the query gene, Zm.16259.1.A1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7489.2PsAffx.psZS009xF02f_atAt4g27230--3e-4At5g59870HTA6O.I.H.G.S.X.
0.3954.5PsAffx.C38000073_atAt4g27230--3e+1At5g16530PIN5 (PIN-FORMED 5)O.I.H.G.S.X.
0.3954.5PsAffx.CL900Contig1_atAt4g27230--2e+0At3g55880unknown proteinO.I.H.G.S.X.
0.3447.2PsAffx.C269000011_atAt4g27230--9e-2At4g32780phosphoinositide bindingO.I.H.G.S.X.
0.3447.2PsAffx.C46000078_atAt4g27230--2e+0At4g27670HSP21 (HEAT SHOCK PROTEIN 21)O.I.H.G.S.X.
0.3447.2PsAffx.CL1623Contig1_atAt4g27230--1e+0At3g53200AtMYB27 (myb domain protein 27)O.I.H.G.S.X.
0.3040.4PsAffx.psHB019xF23f_s_atAt4g27230--4e+0At5g04750F1F0-ATPase inhibitor protein, putativeO.I.H.G.S.X.
0.2939.0PsAffx.C186000004_atAt4g27230--1e+1At4g39675unknown proteinO.I.H.G.S.X.
0.2939.0PsAffx.psZS008xC17f_s_atAt4g27230--7e-4At1g12665-O.I.H.G.S.X.
0.2939.0PsAffx.C148000016_atAt4g27230--6e-5At2g36250FTSZ2-1O.I.H.G.S.X.
0.2735.7PsAffx.C114000056_atAt4g27230--8e-4At3g06400CHR11 (CHROMATIN-REMODELING PROTEIN 11)O.I.H.G.S.X.
0.2633.9PsAffx.psHA011iH03r_s_atAt4g27230--1e+1At5g37900seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.2633.9PsAffx.C61000014_atAt4g27230--3e-10At5g09730BXL3 (beta-xylosidase 3)O.I.H.G.S.X.
0.2633.9PsAffx.CL860Contig1_atAt4g27230--8e-2At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.2532.6PsAffx.CL190Contig1_atAt4g27230--5e+0At5g07950unknown proteinO.I.H.G.S.X.
0.2228.1PsAffx.C3000224_atAt4g27230--4e-2At1g22220F-box family proteinO.I.H.G.S.X.
0.2126.6PsAffx.CL2324Contig1_atAt4g27230--9e-1At5g51650unknown proteinO.I.H.G.S.X.
0.2025.1GmaAffx.80917.1.S1_atAt4g27230--4e+0Atmg01280-O.I.H.G.S.X.
0.1316.3PsAffx.psMA012xJ18f_atAt4g27230--5e-1At4g39070zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.1316.3PsAffx.C29000088_s_atAt4g27230--7e-1At4g16610zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.1215.1PsAffx.C29000074_atAt4g27230--5e+0At5g35475-O.I.H.G.S.X.
0.058.0PsAffx.C152000005_atAt4g27230--5e-1At1g73620thaumatin-like protein, putative / pathogenesis-related protein, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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