Co-expression analysis

Gene ID Zm.16259.1.A1_x_at
Gene name hypothetical protein LOC100273269
Homology with ArabidopsisSimilar to At4g27230: HTA2 (histone H2A) (HF=1e-6)
Module size 6 genes
NF 0.33
%ile 32.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.99Zm.16259.1.A1_x_atBQ539455hypothetical protein LOC100273269-1e-6At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.4759.90.99Zm.6113.1.A1_atCF630251--7e-2At4g22745MBD1O.I.H.G.S.X.
0.3641.30.99Zm.10656.1.A1_atBQ538423hypothetical protein LOC100216802-3e+0At4g25570ACYB-2O.I.H.G.S.X.
0.2828.10.99Zm.2979.1.S1_atBG841486trafficking protein particle complex protein 2-2e-12At1g80500-O.I.H.G.S.X.
0.2622.70.99Zm.6787.1.A1_a_atAF277454.1hypothetical protein LOC100274407 /// UMP synthase-2e-17At3g54470uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)O.I.H.G.S.X.
0.2014.20.98Zm.13232.1.S1_atCA452744tyrosine/DOPA decarboxylase 2-9e-1At2g04630NRPB6BO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.298.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM205420Mo17 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
5.497.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM205424Mo17 19 DAP endosperm tissue biological replicate 2GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
4.696.4GSM205431Mo17 19 DAP endosperm tissue biological replicate 3GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g27230, orthologous to the query gene, Zm.16259.1.A1_x_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3235.7At4g27230828831HTA2 (histone H2A)Encodes HTA2, a histone H2A protein.O.I.H.G.S.X.
0.5773.8At1g07790837293HTB1Encodes a histone 2B (H2B) protein.O.I.H.G.S.X.
0.5773.8At3g20670821614HTA13Encodes HTA13, a histone H2A protein.O.I.H.G.S.X.
0.5065.3At5g59690836090histone H4F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFVO.I.H.G.S.X.
0.3338.1At1g51060841528HTA10Encodes HTA10, a histone H2A protein.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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