Co-expression analysis

Gene ID	Zm.16259.1.A1_x_at
Gene name	hypothetical protein LOC100273269
Homology with Arabidopsis	Similar to At4g27230: HTA2 (histone H2A) (HF=1e-6)
Module size	6 genes
NF	0.33
%ile	32.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.99	Zm.16259.1.A1_x_at	BQ539455	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.99	Zm.6113.1.A1_at	CF630251	-	-	7e-2	At4g22745	MBD1	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.99	Zm.10656.1.A1_at	BQ538423	hypothetical protein LOC100216802	-	3e+0	At4g25570	ACYB-2	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.99	Zm.2979.1.S1_at	BG841486	trafficking protein particle complex protein 2	-	2e-12	At1g80500	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.99	Zm.6787.1.A1_a_at	AF277454.1	hypothetical protein LOC100274407 /// UMP synthase	-	2e-17	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.98	Zm.13232.1.S1_at	CA452744	tyrosine/DOPA decarboxylase 2	-	9e-1	At2g04630	NRPB6B	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM205420	Mo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.4	97.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.6	96.4	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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