Co-expression analysis

Gene ID	Zm.16252.1.A1_at
Gene name	hypothetical protein LOC100217300
Homology with Arabidopsis	Similar to At2g18490: zinc finger (C2H2 type) family protein (HF=1e-1)
Module size	6 genes
NF	0.51
%ile	65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	76.1	0.99	Zm.16252.1.A1_at	CD526604	hypothetical protein LOC100217300	-	1e-1	At2g18490	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.99	Zm.5895.1.A1_at	BM073861	hypothetical protein LOC100193058	-	8e-7	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	ZmAffx.801.1.A1_at	AI770364	-	-	3e+0	At2g02990	RNS1 (RIBONUCLEASE 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.99	ZmAffx.801.1.S1_at	AI770364	-	-	3e+0	At2g02990	RNS1 (RIBONUCLEASE 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	Zm.2584.1.A1_at	CF627035	hypothetical protein LOC100194124	-	1e-13	At3g05550	hypoxia-responsive family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	ZmAffx.553.1.A1_at	AI712209	-	-	3e+0	At4g38850	SAUR15 (SMALL AUXIN UPREGULATED 15)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage