Co-expression analysis

Gene ID	Zm.1616.1.A1_at
Gene name	plasma membrane-bound peroxidase 3-1
Homology with Arabidopsis	Similar to At1g14540: anionic peroxidase, putative (HF=6e-2)
Module size	6 genes
NF	0.07
%ile	4.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.93	Zm.1616.1.A1_at	BM380022	plasma membrane-bound peroxidase 3-1	-	6e-2	At1g14540	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.92	Zm.16159.1.A1_at	CF244218	ubiquitin-protein ligase	-	3e+0	At5g35230	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.93	Zm.4826.1.A1_at	AY107837.1	signal peptide peptidase-like 2B	-	7e-13	At1g63690	protease-associated (PA) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.93	Zm.16532.3.A1_x_at	BM380477	60S ribosomal protein L18a	-	2e-64	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.94	Zm.2122.1.A1_at	AI600377	-	-	9e-2	At3g16870	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.93	Zm.7295.1.S1_at	CO526541	hypothetical protein LOC100276937 /// low-molecular-weight cysteine-rich protein LCR69	-	2e-2	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.9	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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