Co-expression analysis

Gene ID	Zm.16049.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g03850: 40S ribosomal protein S28 (RPS28B) (HF=3e-4)
Module size	6 genes
NF	0.53
%ile	69.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.16049.2.A1_at	CF042888	-	-	3e-4	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.9839.1.A1_at	BM339393	Hypothetical protein LOC100193033	-	3e+0	At2g17300	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.16315.1.S1_a_at	AF326488.1	plasma membrane integral protein ZmPIP1-3	-	3e-24	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.869.2.S1_at	AI711751	Hypothetical protein LOC100192365	-	6e+0	At5g15560	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.1194.1.S1_at	CA403262	fasciclin-like arabinogalactan protein 10	-	2e-1	At5g52930	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.7607.1.A1_at	BM335952	hypothetical protein LOC100192716	-	6e+0	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.5	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.6	92.9	GSM253247	ZM_12h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.6	92.9	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.5	92.6	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.4	92.2	GSM253248	ZM_12h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
2.4	92.2	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
2.3	91.7	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
2.3	91.7	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.2	91.3	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
2.2	91.3	GSM253251	ZM_24h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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