Co-expression analysis

Gene ID Zm.16049.1.S1_at
Gene name 40S ribosomal protein S28
Homology with ArabidopsisSimilar to At5g03850: 40S ribosomal protein S28 (RPS28B) (HF=8e-5)
Module size 7 genes
NF 0.43
%ile 49.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.99Zm.16049.1.S1_atBM88863740S ribosomal protein S28-8e-5At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.6785.80.99Zm.6894.1.A1_atBM380620--7e-47At1g69830AMY3 (ALPHA-AMYLASE-LIKE 3)O.I.H.G.S.X.
0.6381.10.99Zm.6195.1.A1_x_atAI668513hypothetical protein LOC100275106-4e+0At4g17790-O.I.H.G.S.X.
0.3336.00.99Zm.17513.1.A1_atBM074532MFP1 attachment factor 1-5e+0At1g22840CYTC-1 (CYTOCHROME C-1)O.I.H.G.S.X.
0.2928.10.99Zm.5825.1.A1_atAI649790hypothetical protein LOC100279429-1e-2At1g10390nucleoporin family proteinO.I.H.G.S.X.
0.2828.10.99Zm.1693.1.A1_atBM382165--4e-3At3g55670-O.I.H.G.S.X.
0.2014.20.99ZmAffx.485.1.A1_atAI691349--8e-1Atmg00140-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.99--O.I.H.G.S.X.
0.5775.10.99ZmAffx.813.1.A1_atAI770422--2e-1At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.5065.70.99Zm.6141.1.S1_atCA399949MAPK-4e-15At1g10210ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)O.I.H.G.S.X.
0.5065.70.99Zm.7041.1.S1_atBI180256--3e-14At2g48070RPH1 (RESISTANCE TO PHYTOPHTHORA 1)O.I.H.G.S.X.
0.5065.70.99Zm.583.1.S1_atAF305892.1tangled1-3e-1At1g21350antioxidant/ oxidoreductaseO.I.H.G.S.X.
0.4455.70.99Zm.4152.1.A1_atAI855242hypothetical protein LOC100277510-4e+0At5g2785060S ribosomal protein L18 (RPL18C)O.I.H.G.S.X.
0.4455.70.99Zm.9295.1.A1_atBM269221--2e-1At1g03055unknown proteinO.I.H.G.S.X.
0.4048.50.99Zm.15891.2.A1_atBM26766060S ribosomal protein L13-2-7e-31At5g2390060S ribosomal protein L13 (RPL13D)O.I.H.G.S.X.
0.4048.50.99Zm.13245.1.S1_atAF450481.1CBF3-like protein-2e+0At3g22800leucine-rich repeat family protein / extensin family proteinO.I.H.G.S.X.
0.3844.20.98Zm.7572.3.A1_atAY105700.1--3e-1At1g02090FUS5 (FUSCA 5)O.I.H.G.S.X.
0.3844.20.99Zm.9354.1.A1_atBM268306--1e+0At2g28330unknown proteinO.I.H.G.S.X.
0.3641.30.99Zm.19282.1.A1_atCO518549galactose-1-phosphate uridyl transferase-like protein-4e-1At3g03400calmodulin-related protein, putativeO.I.H.G.S.X.
0.3538.90.98Zm.4445.1.A1_atAW497446hypothetical protein LOC100194391-7e+0At5g18250unknown proteinO.I.H.G.S.X.
0.3538.90.98Zm.3383.1.S1_atCD998670bifunctional coenzyme A synthase-5e-1At1g32580plastid developmental protein DAG, putativeO.I.H.G.S.X.
0.3336.00.99ZmAffx.1166.1.S1_atAW585299--5e-14At5g19780TUA5O.I.H.G.S.X.
0.3233.40.98Zm.8639.1.A1_atBM332170--2e+1At5g58600PMR5 (POWDERY MILDEW RESISTANT 5)O.I.H.G.S.X.
0.3233.40.98Zm.8490.1.A1_atCB351020hypothetical protein LOC100277467-4e+0At2g23290AtMYB70 (myb domain protein 70)O.I.H.G.S.X.
0.3131.60.98ZmAffx.1038.1.A1_atAI881773--3e+0At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.
0.3131.60.98Zm.3783.1.S1_atAW331211Betaine aldehyde dehydrogenase-6e-4At3g48170ALDH10A9O.I.H.G.S.X.
0.3131.60.99Zm.878.2.S1_atCF01626760S ribosomal protein L35-4e-19At5g0261060S ribosomal protein L35 (RPL35D)O.I.H.G.S.X.
0.3131.60.99Zm.13841.1.S1_atAY104076.1--2e-42At3g62270anion exchange family proteinO.I.H.G.S.X.
0.3029.80.98Zm.14524.1.S1_atAY104558.1hypothetical protein LOC100272454-8e-3At4g38620MYB4O.I.H.G.S.X.
0.3029.80.99Zm.6121.1.S1_atCD439726--4e-1At5g54540-O.I.H.G.S.X.
0.2928.10.98Zm.19183.1.A1_atCO521416--1e+0At1g50040unknown proteinO.I.H.G.S.X.
0.2928.10.98ZmAffx.165.1.S1_atAI668200--3e+0At3g28760-O.I.H.G.S.X.
0.2928.10.99Zm.16824.1.S1_atCF602732SAM domain family protein-5e-1At3g07170sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.2828.10.99Zm.7327.1.A1_atAF289256.1nuclear matrix protein 1-4e-2At5g17620-O.I.H.G.S.X.
0.2724.60.98Zm.17015.1.S1_atCO532022hypothetical protein LOC100280074-4e-2At5g37200zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2724.60.98ZmAffx.845.1.S1_atAI770615thaumatin-like protein-3e-2At3g50980XERO1 (DEHYDRIN XERO 1)O.I.H.G.S.X.
0.2724.60.98Zm.1869.1.S1_atBU051083hypothetical protein LOC100274336-8e-5At4g05020NDB2 (NAD(P)H dehydrogenase B2)O.I.H.G.S.X.
0.2622.70.98Zm.18109.1.S1_atAI881274--3e+0At4g23340oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.2622.70.99Zm.6592.1.A1_atAI467742kelch motif family protein-2e-2At1g51540-O.I.H.G.S.X.
0.2521.30.98Zm.18511.1.S1_atCO523535zinc transporter 4-1e-18At1g10970ZIP4 (ZINC TRANSPORTER 4 PRECURSOR)O.I.H.G.S.X.
0.2521.30.98ZmAffx.963.1.A1_atAI833792--8e-1At4g04620ATG8B (autophagy 8b)O.I.H.G.S.X.
0.2521.30.98Zm.8752.1.A1_atAY107176.1hypothetical protein LOC100278587-4e-2At2g32260cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putativeO.I.H.G.S.X.
0.2521.30.99ZmAffx.860.1.S1_atAI770699--8e-1At3g48840nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.2521.30.99ZmAffx.754.1.S1_atAI745921--2e-1At1g33960AIG1 (AVRRPT2-INDUCED GENE 1)O.I.H.G.S.X.
0.2521.30.99ZmAffx.1083.1.A1_atAI974922--1e+0At1g59830PP2A-1O.I.H.G.S.X.
0.2521.30.99Zm.11779.1.A1_atCO527258hypothetical protein LOC100217298-3e+0At3g47800aldose 1-epimerase family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.297.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM205436B73xMo17 19 DAP endosperm tissue biological replicate 3GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
2.492.2GSM205429B73xMo17 19 DAP endosperm tissue biological replicate 2GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
2.492.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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