Co-expression analysis

Gene ID Zm.16049.1.S1_at
Gene name 40S ribosomal protein S28
Homology with ArabidopsisSimilar to At5g03850: 40S ribosomal protein S28 (RPS28B) (HF=8e-5)
Module size 7 genes
NF 0.43
%ile 49.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.99Zm.16049.1.S1_atBM88863740S ribosomal protein S28-8e-5At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.6785.80.99Zm.6894.1.A1_atBM380620--7e-47At1g69830AMY3 (ALPHA-AMYLASE-LIKE 3)O.I.H.G.S.X.
0.6381.10.99Zm.6195.1.A1_x_atAI668513hypothetical protein LOC100275106-4e+0At4g17790-O.I.H.G.S.X.
0.3336.00.99Zm.17513.1.A1_atBM074532MFP1 attachment factor 1-5e+0At1g22840CYTC-1 (CYTOCHROME C-1)O.I.H.G.S.X.
0.2928.10.99Zm.5825.1.A1_atAI649790hypothetical protein LOC100279429-1e-2At1g10390nucleoporin family proteinO.I.H.G.S.X.
0.2828.10.99Zm.1693.1.A1_atBM382165--4e-3At3g55670-O.I.H.G.S.X.
0.2014.20.99ZmAffx.485.1.A1_atAI691349--8e-1Atmg00140-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.297.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM205436B73xMo17 19 DAP endosperm tissue biological replicate 3GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
2.492.2GSM205429B73xMo17 19 DAP endosperm tissue biological replicate 2GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
2.492.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.26780.1.A1_at, orthologous to the query gene, Zm.16049.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6986.9Ta.26780.1.A1_atAt5g03850--7e-8At3g1009040S ribosomal protein S28 (RPS28A)O.I.H.G.S.X.
0.3651.9TaAffx.107697.1.S1_atAt5g03850--2e+1At5g14740CA2 (CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.3346.9TaAffx.104576.1.A1_atAt5g03850--1e+0At1g16520unknown proteinO.I.H.G.S.X.
0.2939.2TaAffx.85529.1.S1_atAt5g03850--4e+0At2g35270DNA-binding protein-relatedO.I.H.G.S.X.
0.2329.0TaAffx.30857.1.S1_atAt5g03850--3e+0At5g21010ATBPM5 (BTB-POZ and MATH domain 5)O.I.H.G.S.X.
0.2227.1Ta.25119.1.S1_x_atAt5g03850Calmodulin TaCaM4-1-2e-20At2g27030CAM5 (CALMODULIN 5)O.I.H.G.S.X.
0.2024.0TaAffx.85713.1.S1_atAt5g03850--4e+0At2g32710KRP4O.I.H.G.S.X.
0.2024.0TaAffx.23480.1.S1_atAt5g03850--1e+0At5g58920unknown proteinO.I.H.G.S.X.
0.1922.4TaAffx.78823.1.S1_atAt5g03850--4e+0At5g26840unknown proteinO.I.H.G.S.X.
0.1719.8TaAffx.54505.1.S1_atAt5g03850--4e+0At5g25760PEX4 (PEROXIN4)O.I.H.G.S.X.
0.1618.2Ta.17218.1.S1_atAt5g03850--2e+1At5g08260scpl35 (serine carboxypeptidase-like 35)O.I.H.G.S.X.
0.1415.8TaAffx.81141.1.S1_atAt5g03850--1e+0At3g52760integral membrane Yip1 family proteinO.I.H.G.S.X.
0.1314.6TaAffx.25597.1.S1_atAt5g03850--1e+0At4g29740CKX4 (CYTOKININ OXIDASE 4)O.I.H.G.S.X.
0.078.6TaAffx.51913.1.S1_x_atAt5g03850--8e-1At5g56110ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)O.I.H.G.S.X.
0.067.6TaAffx.84526.1.S1_atAt5g03850--3e+0At2g36895unknown proteinO.I.H.G.S.X.
0.067.6TaAffx.104602.1.A1_atAt5g03850--2e+0At5g09780transcriptional factor B3 family proteinO.I.H.G.S.X.
0.034.7TaAffx.52906.1.S1_atAt5g03850--2e+1At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.034.7Ta.15471.1.A1_atAt5g03850--2e+1At5g61640PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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