| Gene ID | Zm.16049.1.S1_at |
| Gene name | 40S ribosomal protein S28 |
| Homology with Arabidopsis | Similar to At5g03850: 40S ribosomal protein S28 (RPS28B) (HF=8e-5) |
| Module size | 7 genes |
| NF | 0.43 |
| %ile | 49.9 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.67 | 85.8 | 0.99 | Zm.16049.1.S1_at | BM888637 | 40S ribosomal protein S28 | - | 8e-5 | At5g03850 | 40S ribosomal protein S28 (RPS28B) | O.I. | H.G. | S.X. | |
| 0.67 | 85.8 | 0.99 | Zm.6894.1.A1_at | BM380620 | - | - | 7e-47 | At1g69830 | AMY3 (ALPHA-AMYLASE-LIKE 3) | O.I. | H.G. | S.X. | |
| 0.63 | 81.1 | 0.99 | Zm.6195.1.A1_x_at | AI668513 | hypothetical protein LOC100275106 | - | 4e+0 | At4g17790 | - | O.I. | H.G. | S.X. | |
| 0.33 | 36.0 | 0.99 | Zm.17513.1.A1_at | BM074532 | MFP1 attachment factor 1 | - | 5e+0 | At1g22840 | CYTC-1 (CYTOCHROME C-1) | O.I. | H.G. | S.X. | |
| 0.29 | 28.1 | 0.99 | Zm.5825.1.A1_at | AI649790 | hypothetical protein LOC100279429 | - | 1e-2 | At1g10390 | nucleoporin family protein | O.I. | H.G. | S.X. | |
| 0.28 | 28.1 | 0.99 | Zm.1693.1.A1_at | BM382165 | - | - | 4e-3 | At3g55670 | - | O.I. | H.G. | S.X. | |
| 0.20 | 14.2 | 0.99 | ZmAffx.485.1.A1_at | AI691349 | - | - | 8e-1 | Atmg00140 | - | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 7.2 | 97.8 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.2 | 97.8 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.8 | 97.6 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.2 | 96.9 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.9 | 96.7 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.0 | 95.8 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 2.7 | 93.2 | GSM205436 | B73xMo17 19 DAP endosperm tissue biological replicate 3 | GSE8278 | Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP | |
| 2.4 | 92.2 | GSM205429 | B73xMo17 19 DAP endosperm tissue biological replicate 2 | GSE8278 | Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP | |
| 2.4 | 92.2 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 2.4 | 92.2 | GSM253280 | ZM_8d_SG200_3Alu_I | GSE10023 | Maize gene expression during infection with Ustilago maydis | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.91 | 98.9 | Os10g0411700 | At5g03850 | - | Ribosomal protein S28 | 5e-3 | At3g10090 | 40S ribosomal protein S28 (RPS28A) | O.I. | H.G. | S.X. | |
| 0.83 | 95.8 | Os01g0328400 | At5g03850 | - | Ubiquitin | 7e-66 | At2g47110 | UBQ6 | O.I. | H.G. | S.X. | |
| 0.71 | 89.6 | Os03g0234200 | At5g03850 | - | Ubiquitin fused to ribosomal protein L40 | 3e-45 | At3g52590 | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) | O.I. | H.G. | S.X. | |
| 0.67 | 87.2 | Os02g0717800 | At5g03850 | - | Ribosomal protein L31e domain containing protein | 3e-10 | At5g56710 | 60S ribosomal protein L31 (RPL31C) | O.I. | H.G. | S.X. | |
| 0.60 | 79.7 | Os03g0424500 | At5g03850 | - | 40S ribosomal protein S19 | 5e-10 | At5g61170 | 40S ribosomal protein S19 (RPS19C) | O.I. | H.G. | S.X. | |
| 0.53 | 71.3 | Os05g0160200 | At5g03850 | - | The start codon is not identified. | 6e-74 | At2g47110 | UBQ6 | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
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