CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.16049.1.S1_at

Gene name 40S ribosomal protein S28
Homology with Arabidopsis Similar to At5g03850: 40S ribosomal protein S28 (RPS28B) (HF=8e-5)

Module size 7 genes

NF 0.43

%ile 49.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 0.99 Zm.16049.1.S1_at BM888637 40S ribosomal protein S28 - 8e-5 At5g03850 40S ribosomal protein S28 (RPS28B) O.I. H.G. S.X.
0.67 85.8 0.99 Zm.6894.1.A1_at BM380620 - - 7e-47 At1g69830 AMY3 (ALPHA-AMYLASE-LIKE 3) O.I. H.G. S.X.
0.63 81.1 0.99 Zm.6195.1.A1_x_at AI668513 hypothetical protein LOC100275106 - 4e+0 At4g17790 - O.I. H.G. S.X.
0.33 36.0 0.99 Zm.17513.1.A1_at BM074532 MFP1 attachment factor 1 - 5e+0 At1g22840 CYTC-1 (CYTOCHROME C-1) O.I. H.G. S.X.
0.29 28.1 0.99 Zm.5825.1.A1_at AI649790 hypothetical protein LOC100279429 - 1e-2 At1g10390 nucleoporin family protein O.I. H.G. S.X.
0.28 28.1 0.99 Zm.1693.1.A1_at BM382165 - - 4e-3 At3g55670 - O.I. H.G. S.X.
0.20 14.2 0.99 ZmAffx.485.1.A1_at AI691349 - - 8e-1 Atmg00140 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.2 97.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8 97.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2 96.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9 96.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0 95.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7 93.2 GSM205436 B73xMo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.4 92.2 GSM205429 B73xMo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.4 92.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4 92.2 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the barley gene, Contig3403_s_at, orthologous to the query gene, Zm.16049.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 Contig3403_s_at At5g03850 - - 2e-2 At5g03850 40S ribosomal protein S28 (RPS28B) O.I. H.G. S.X.
0.69 85.5 Contig14012_at At5g03850 - - 7e-1 At4g23920 UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2) O.I. H.G. S.X.
0.58 74.9 Contig16073_at At5g03850 - - 3e-2 At5g37200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.57 74.9 Contig3229_s_at At5g03850 - - 7e+0 At5g54410 unknown protein O.I. H.G. S.X.
0.52 68.3 Contig2846_at At5g03850 - - 3e-5 At2g27285 unknown protein O.I. H.G. S.X.
0.48 63.2 Contig6152_at At5g03850 - - 7e-2 At3g59140 ATMRP14 O.I. H.G. S.X.
0.47 62.2 Contig3967_at At5g03850 - - 6e-16 At5g47040 LON2 (LON PROTEASE 2) O.I. H.G. S.X.
0.40 53.1 HVSMEb0001F21r2_x_at At5g03850 - - 4e+0 At5g48170 SLY2 (SLEEPY2) O.I. H.G. S.X.
0.36 47.1 Contig272_s_at At5g03850 - - 5e-1 At3g45230 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.36 47.1 Contig326_x_at At5g03850 - - 0 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) O.I. H.G. S.X.
0.35 45.1 Contig5893_at At5g03850 - - 1e-52 At1g04170 EIF2 GAMMA O.I. H.G. S.X.
0.33 42.6 Contig6905_s_at At5g03850 - - 2e+0 At4g19620 unknown protein O.I. H.G. S.X.
0.29 35.5 Contig4873_s_at At5g03850 - - 4e+0 At5g17847 unknown protein O.I. H.G. S.X.
0.28 35.5 Contig6751_at At5g03850 - - 1e+0 At3g04990 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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