Co-expression analysis

Gene ID Zm.16049.1.S1_at
Gene name 40S ribosomal protein S28
Homology with ArabidopsisSimilar to At5g03850: 40S ribosomal protein S28 (RPS28B) (HF=8e-5)
Module size 7 genes
NF 0.43
%ile 49.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.99Zm.16049.1.S1_atBM88863740S ribosomal protein S28-8e-5At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.6785.80.99Zm.6894.1.A1_atBM380620--7e-47At1g69830AMY3 (ALPHA-AMYLASE-LIKE 3)O.I.H.G.S.X.
0.6381.10.99Zm.6195.1.A1_x_atAI668513hypothetical protein LOC100275106-4e+0At4g17790-O.I.H.G.S.X.
0.3336.00.99Zm.17513.1.A1_atBM074532MFP1 attachment factor 1-5e+0At1g22840CYTC-1 (CYTOCHROME C-1)O.I.H.G.S.X.
0.2928.10.99Zm.5825.1.A1_atAI649790hypothetical protein LOC100279429-1e-2At1g10390nucleoporin family proteinO.I.H.G.S.X.
0.2828.10.99Zm.1693.1.A1_atBM382165--4e-3At3g55670-O.I.H.G.S.X.
0.2014.20.99ZmAffx.485.1.A1_atAI691349--8e-1Atmg00140-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.297.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM205436B73xMo17 19 DAP endosperm tissue biological replicate 3GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
2.492.2GSM205429B73xMo17 19 DAP endosperm tissue biological replicate 2GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
2.492.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g03850, orthologous to the query gene, Zm.16049.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.7083.5At5g0385083169240S ribosomal protein S28 (RPS28B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane;MOAPFO.I.H.G.S.X.
0.8089.8At4g3386582952940S ribosomal protein S29 (RPS29C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MAOPFO.I.H.G.S.X.
0.7788.0At3g0950082010760S ribosomal protein L35 (RPL35A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOBAFPO.I.H.G.S.X.
0.6882.2At3g6024582519560S ribosomal protein L37a (RPL37aC)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.H.G.S.X.
0.6882.2At4g09320826515NDPK1nucleoside diphosphate kinase type 1 (NDPK1) gene, completeO.I.H.G.S.X.
0.6680.1At3g52590824425UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)Ubiquitin extension proteinO.I.H.G.S.X.
0.6478.9At2g18020816314EMB2296 (embryo defective 2296)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:in 7 components;BOPMAFO.I.H.G.S.X.
0.6478.9At3g4398082351540S ribosomal protein S29 (RPS29A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MAOPFO.I.H.G.S.X.
0.6176.7At1g14320837993SAC52 (SUPPRESSOR OF ACAULIS 52)Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.O.I.H.G.S.X.
0.5570.6At5g23740832439RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)Encodes a putative ribosomal protein S11 (RPS11-beta).O.I.H.G.S.X.
0.5267.4At3g04400819595emb2171 (embryo defective 2171)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic large ribosomal subunit, ribosome;BOPMAFO.I.H.G.S.X.
0.5267.4At5g3553083351840S ribosomal protein S3 (RPS3C)F:structural constituent of ribosome;P:response to salt stress, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;BOMAPFO.I.H.G.S.X.
0.5065.3At5g5265083534240S ribosomal protein S10 (RPS10C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane;MOPFBVO.I.H.G.S.X.
0.4963.5At4g1810082753560S ribosomal protein L32 (RPL32A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus;MAOPFO.I.H.G.S.X.
0.4862.5At1g4883084130540S ribosomal protein S7 (RPS7A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast;MPOFO.I.H.G.S.X.
0.4761.2At2g0439081497840S ribosomal protein S17 (RPS17A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus, plasma membrane;MOAFPO.I.H.G.S.X.
0.4761.2At3g2483082208160S ribosomal protein L13A (RPL13aB)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane;OMBAPFO.I.H.G.S.X.
0.4761.2At3g49010824062ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).O.I.H.G.S.X.
0.4761.2At1g1593083816340S ribosomal protein S12 (RPS12A)F:structural constituent of ribosome;P:response to cadmium ion, response to salt stress, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome;MAOFPO.I.H.G.S.X.
0.4659.8At4g09800826569RPS18C (S18 RIBOSOMAL PROTEIN)encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complexO.I.H.G.S.X.
0.4659.8At1g4188084079960S ribosomal protein L35a (RPL35aB)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, membrane;MOFPAO.I.H.G.S.X.
0.3948.4At2g1973081649260S ribosomal protein L28 (RPL28A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFOO.I.H.G.S.X.
0.3745.0At2g37270818304ATRPS5B (RIBOSOMAL PROTEIN 5B)One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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