Co-expression analysis

Gene ID	Zm.15971.1.S1_at
Gene name	40S ribosomal protein S27a
Homology with Arabidopsis	Similar to At2g47110: UBQ6 (HF=1e-44)
Module size	9 genes
NF	0.58
%ile	76.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	90.3	0.97	Zm.15971.1.S1_at	CF638101	40S ribosomal protein S27a	-	1e-44	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	ZmAffx.462.1.S1_at	AI677305	-	-	3e+0	At4g22870	leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.96	Zm.9958.2.A1_at	CA399148	-	-	2e+0	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.96	Zm.4190.1.A1_at	BE344878	-	-	9e-31	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.6714.1.A1_at	CF008274	hypothetical protein LOC100194327	-	7e-3	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.96	Zm.5290.1.S1_at	AY104548.1	F-box domain containing protein	-	4e+0	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.3772.1.S1_at	CF010220	Zea m 1 allergen	-	6e-4	At2g40470	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.15961.1.S1_a_at	CK369834	-	-	4e-1	At3g19920	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.5277.1.S1_at	AI619073	-	-	1e+0	At4g39750	F-box family protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.0	GSM206312	Upper pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.7	93.2	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.7	93.2	GSM206318	Lower pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.7	93.2	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.5	92.6	GSM206321	Lower pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.4	92.2	GSM206315	Upper pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.3	91.7	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.2	91.3	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.2	91.3	GSM206322	Lower pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.2	91.3	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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