Co-expression analysis

Gene ID	Zm.15919.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g25290: F-box family protein (HF=2e+0)
Module size	7 genes
NF	0.09
%ile	4.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.86	Zm.15919.1.S1_at	AY105419.1	-	-	2e+0	At5g25290	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.85	Zm.9089.1.A1_at	BM332138	-	-	5e+0	At5g39340	AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.86	Zm.17709.1.S1_at	CK369588	-	-	3e+0	At5g62660	F-box family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.86	Zm.2197.3.A1_a_at	CF650537	cystathionine gamma-synthase1 /// hypothetical protein LOC100191523	-	1e-5	At3g01120	MTO1 (METHIONINE OVERACCUMULATION 1)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.91	Zm.4189.1.S1_at	BM378985	Pyruvate Pi dikinase regulatory protein	-	5e-2	At3g01200	AtRP2 (PPDK regulatory protein 2)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.86	Zm.19019.1.A1_at	BM080703	hypothetical protein LOC100276837	-	2e+0	At5g54850	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.86	Zm.7058.3.S1_x_at	AY103767.1	ypt homolog2	-	4e-76	At5g47200	ATRAB1A	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.3	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.9	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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