Co-expression analysis

Gene ID Zm.15906.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g17290: AlaAT1 (ALANINE AMINOTRANSFERAS) (HF=6e-6)
Module size 7 genes
NF 0.67
%ile 89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5571.60.97Zm.15906.1.A1_atAI622748--6e-6At1g17290AlaAT1 (ALANINE AMINOTRANSFERAS)O.I.H.G.S.X.
0.8094.00.98Zm.10383.3.A1_atAW562601--9e-20At3g05060SAR DNA-binding protein, putativeO.I.H.G.S.X.
0.7188.20.98Zm.3615.1.A1_atAW330686hypothetical protein LOC100191498-3e-9At1g73670ATMPK15O.I.H.G.S.X.
0.7188.20.98Zm.8751.1.A1_atBM348137--1e+0At3g05700-O.I.H.G.S.X.
0.6077.80.98Zm.6968.1.A1_atAI065873apurinic endonuclease-redox protein-2e+0At3g077503' exoribonuclease family domain 1-containing proteinO.I.H.G.S.X.
0.5775.10.98Zm.4805.1.A1_atCD441355heat shock protein 70 kDa-0At5g02500HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)O.I.H.G.S.X.
0.4455.70.98Zm.18416.1.A1_atCO524449hypothetical protein LOC100193203-3e-1At3g27900unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.298.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM385709Deep-sowing 10d treatment TIBA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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