Co-expression analysis

Gene ID	Zm.15903.3.A1_at
Gene name	hypothetical protein LOC100273579
Homology with Arabidopsis	Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=4e-12)
Module size	6 genes
NF	0.18
%ile	13.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.91	Zm.15903.3.A1_at	AY104679.1	hypothetical protein LOC100273579	-	4e-12	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.92	Zm.354.2.S1_a_at	U37428.1	glossy1	-	5e-2	At4g19150	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.92	Zm.11871.1.A1_at	BM381412	-	-	1e+0	At5g55140	ribosomal protein L30 family protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.92	Zm.2469.1.A1_at	AI714755	novel plant SNARE 11	-	7e-7	At3g17440	NPSN13 (NOVEL PLANT SNARE 13)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.91	Zm.3963.1.S1_at	AI711958	hypothetical protein LOC100194116	-	3e+0	At5g65166	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.92	Zm.359.1.S1_at	U82481.1	kinase interacting kinase1	-	2e-6	At3g16030	CES101 (CALLUS EXPRESSION OF RBCS 101)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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