Co-expression analysis

Gene ID Zm.15857.1.A1_at
Gene name calcium-dependent protein kinase
Homology with ArabidopsisSimilar to At1g50700: CPK33 (HF=2e-36)
Module size 6 genes
NF 0.15
%ile 9.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.15857.1.A1_atD85039.1calcium-dependent protein kinase-2e-36At1g50700CPK33O.I.H.G.S.X.
0.3844.20.99ZmAffx.955.1.S1_atAI833505--8e-1At2g47480unknown proteinO.I.H.G.S.X.
0.2216.90.99Zm.6435.1.A1_atBM078602hypothetical protein LOC100217154-1e-5At2g22370unknown proteinO.I.H.G.S.X.
0.147.70.99Zm.16320.1.S1_atCO526259hypothetical protein LOC100193231-3e-6At3g19910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.062.30.98Zm.11694.1.A1_atCK369414R2R3MYB-domain protein-2e-5At3g12820AtMYB10 (myb domain protein 10)O.I.H.G.S.X.
0.051.90.99ZmAffx.13.1.S1_s_atAY372245.1cellulose synthase 11-2e-61At4g18780IRX1 (IRREGULAR XYLEM 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.2318.60.99Zm.1611.1.A1_atAW787466--5e+0At2g39790mitochondrial glycoprotein family protein / MAM33 family proteinO.I.H.G.S.X.
0.2216.91.00Zm.12070.1.A1_atBM418472ribonuclease P-2e-1At3g02090mitochondrial processing peptidase beta subunit, putativeO.I.H.G.S.X.
0.2115.50.99Zm.1686.1.A1_atCF630564hypothetical protein LOC100193643-5e-5At1g05620URH2 (URIDINE-RIBOHYDROLASE 2)O.I.H.G.S.X.
0.2014.20.99Zm.11997.1.A1_atBM382529--4e+0At5g67010AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.1811.60.95Zm.1141.2.A1_atBM351386hypothetical protein LOC100276557-9e-14At1g22910RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.1710.60.99Zm.5406.1.S1_atBM337472--2e-6At1g11240unknown proteinO.I.H.G.S.X.
0.1710.61.00ZmAffx.781.1.A1_atAI746268--1e+1At4g37450AGP18 (ARABINOGALACTAN PROTEIN 18)O.I.H.G.S.X.
0.1710.60.99Zm.8311.2.A1_a_atBM073622--4e+0At4g23090unknown proteinO.I.H.G.S.X.
0.158.60.99ZmAffx.832.1.S1_atAI770560hypothetical protein LOC100274340-5e-2At5g51990CBF4 (C- REPEAT-BINDING FACTOR 4)O.I.H.G.S.X.
0.158.60.99Zm.4960.1.S1_atAY103963.1hypothetical protein LOC100216710-2e-45At1g80660AHA9O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.398.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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