Co-expression analysis

Gene ID	Zm.15857.1.A1_at
Gene name	calcium-dependent protein kinase
Homology with Arabidopsis	Similar to At1g50700: CPK33 (HF=2e-36)
Module size	6 genes
NF	0.15
%ile	9.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.15857.1.A1_at	D85039.1	calcium-dependent protein kinase	-	2e-36	At1g50700	CPK33	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	ZmAffx.955.1.S1_at	AI833505	-	-	8e-1	At2g47480	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.99	Zm.6435.1.A1_at	BM078602	hypothetical protein LOC100217154	-	1e-5	At2g22370	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.99	Zm.16320.1.S1_at	CO526259	hypothetical protein LOC100193231	-	3e-6	At3g19910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.98	Zm.11694.1.A1_at	CK369414	R2R3MYB-domain protein	-	2e-5	At3g12820	AtMYB10 (myb domain protein 10)	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.99	ZmAffx.13.1.S1_s_at	AY372245.1	cellulose synthase 11	-	2e-61	At4g18780	IRX1 (IRREGULAR XYLEM 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.2423.1.S1_at, orthologous to the query gene, Zm.15857.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	Ta.2423.1.S1_at	At1g50700	Calcium-dependent protein kinase	-	3e-23	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.105011.1.S1_at	At1g50700	-	-	1e+0	At1g49300	RABG3E (RAB GTPASE HOMOLOG G3E)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.2982.1.S1_a_at	At1g50700	GTP-binding protein	-	3e-37	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.3797.3.S1_x_at	At1g50700	-	-	2e+1	At5g11425	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.3797.3.S1_a_at	At1g50700	-	-	2e+1	At5g11425	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.30734.3.S1_a_at	At1g50700	-	-	2e-8	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.30734.3.S1_x_at	At1g50700	-	-	2e-8	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.6867.3.A1_a_at	At1g50700	-	-	1e+0	At1g17147	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage