Co-expression analysis

Gene ID Zm.15846.1.A1_s_at
Gene name
Homology with ArabidopsisSimilar to At1g52360: coatomer protein complex, subunit beta 2 (beta prime), putative (HF=1e-4)
Module size 6 genes
NF 0.61
%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.15846.1.A1_s_atAA979796--1e-4At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.9199.00.99Zm.15845.1.S1_atCF244242hypothetical protein LOC100216966-5e+0At3g10850GLY2O.I.H.G.S.X.
0.6077.80.99Zm.3044.2.A1_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.6077.80.99Zm.3044.2.S1_a_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.4352.80.99RPTR-Zm-M10961-2_atRPTR-Zm-M10961-2---O.I.H.G.S.X.
0.2724.60.99RPTR-Zm-M57289-1_s_atRPTR-Zm-M57289-1---O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8094.00.97Zm.11326.1.S1_atCK371523hypothetical protein LOC100194219-2e+0At1g08630THA1 (Threonine Aldolase 1)O.I.H.G.S.X.
0.6785.80.98Zm.7797.1.A1_atBM079946mitochondrial import inner membrane translocase subunit Tim8-4e+0At5g44060unknown proteinO.I.H.G.S.X.
0.6381.10.97Zm.7347.1.A1_atBM079051hypothetical protein LOC100278698-2e+0At5g51795Kin17 DNA-binding protein-relatedO.I.H.G.S.X.
0.6179.50.97Zm.5808.1.A1_atBM078229peroxidase 39-7e-1At5g58400peroxidase, putativeO.I.H.G.S.X.
0.6179.50.98Zm.3022.1.A1_atCF632756hypothetical protein LOC100275367-1e-2At5g42100ATBG_PAPO.I.H.G.S.X.
0.6077.80.99Zm.5723.1.A1_atBM079835fiber protein Fb2-9e-3At4g33740unknown proteinO.I.H.G.S.X.
0.5775.10.96Zm.16842.1.A1_atCF602571oxidoreductase-3e+0At1g66230MYB20 (myb domain protein 20)O.I.H.G.S.X.
0.5775.10.98Zm.5687.1.A1_atAI629947--5e-4At1g30270CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)O.I.H.G.S.X.
0.5775.10.98Zm.6077.1.A1_atCO532924--6e-19At2g31810acetolactate synthase small subunit, putativeO.I.H.G.S.X.
0.5065.70.98Zm.13261.1.A1_atBM074679--6e-4At1g12340-O.I.H.G.S.X.
0.5065.70.98Zm.15843.1.S1_atCD988927hypothetical protein LOC100275209-9e-1At2g39770CYT1 (CYTOKINESIS DEFECTIVE 1)O.I.H.G.S.X.
0.5065.70.99Zm.3048.2.A1_atCF062150hypothetical protein LOC100277239-2e-5At2g31490unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.3044.1.S1_atAW360661--2e-10At1g27900RNA helicase, putativeO.I.H.G.S.X.
0.4658.40.97Zm.3616.1.A1_atBM380107hypothetical protein LOC100193860-4e-5At5g24650mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.4658.40.98Zm.1423.1.A1_atCF047935RING zinc finger protein-like-2e-7At1g69330zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4455.70.97Zm.3657.1.A1_atBG874068--1e+0At5g42635glycine-rich proteinO.I.H.G.S.X.
0.4455.70.97Zm.975.1.A1_atCF016461hypothetical protein LOC100274388-3e-2At4g27660unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.526.1.S1_atAF242320.1hypothetical LOC541826-1e-3At5g14620DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.4048.50.98Zm.4669.1.S1_atAI737897Growth-regulating factor 9-like-5e-5At3g52910AtGRF4 (GROWTH-REGULATING FACTOR 4)O.I.H.G.S.X.
0.4048.50.99Zm.14412.1.S1_a_atBM337383hypothetical protein LOC100194289-4e-15At4g1810060S ribosomal protein L32 (RPL32A)O.I.H.G.S.X.
0.3945.60.98Zm.5141.1.A1_atCF628146--2e-60At1g69960PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)O.I.H.G.S.X.
0.3844.20.95Zm.15840.1.A1_atCK827017BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-7e-13At5g21090leucine-rich repeat protein, putativeO.I.H.G.S.X.
0.3844.20.99Zm.6217.1.A1_atBE129797plant-specific domain TIGR01589 family protein-7e-1At1g28600lipase, putativeO.I.H.G.S.X.
0.3742.30.93Zm.10239.1.S1_atAF461813.1chromatin complex subunit A101-5e-25At5g66750CHR1 (CHROMATIN REMODELING 1)O.I.H.G.S.X.
0.3742.30.98Zm.3674.1.S1_atAW037202--3e+0At2g29880unknown proteinO.I.H.G.S.X.
0.3641.30.97Zm.1584.1.A1_atCO524456hypothetical protein LOC100273018-1e-10At4g28706pfkB-type carbohydrate kinase family proteinO.I.H.G.S.X.
0.3641.30.97Zm.13602.1.S1_atBG265455--1e+0At5g57180CIA2 (CHLOROPLAST IMPORT APPARATUS 2)O.I.H.G.S.X.
0.3641.30.97Zm.7146.1.A1_atCF00389930S ribosomal protein S17 /// hypothetical protein LOC100276656-3e-20At1g79850RPS17 (RIBOSOMAL PROTEIN S17)O.I.H.G.S.X.
0.3641.30.98Zm.7570.1.A1_atBM078988flavonol synthase-like protein-2e-2At3g502102-oxoacid-dependent oxidase, putativeO.I.H.G.S.X.
0.3641.30.98Zm.3379.1.A1_atBM075631hypothetical protein LOC100272941-1e+0At3g59250F-box family proteinO.I.H.G.S.X.
0.3641.30.99Zm.13266.1.S1_a_atCO534075hypothetical protein LOC100276122-2e+0At1g79780-O.I.H.G.S.X.
0.3538.90.98Zm.2978.1.A1_atCF020493--4e-10At1g18440peptidyl-tRNA hydrolase family proteinO.I.H.G.S.X.
0.3538.90.98Zm.6560.1.S1_a_atZ29518.11-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 /// phospholipid synthesis1-8e-35At3g57650LPAT2O.I.H.G.S.X.
0.3336.00.94Zm.15044.1.A1_atCF631612hypothetical protein LOC100193123-9e-18At1g08450CRT3 (CALRETICULIN 3)O.I.H.G.S.X.
0.3336.00.97Zm.14912.1.S1_atBQ703314Zea mays MADS7-1e-2At2g45650AGL6 (AGAMOUS-LIKE 6)O.I.H.G.S.X.
0.3336.00.98Zm.6264.1.S1_atBG266134Hypothetical protein LOC100191870-4e-34At1g70300KUP6O.I.H.G.S.X.
0.3336.00.98Zm.13423.1.A1_atAI738122--1e+0At3g59350serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.3336.00.98Zm.10852.1.A1_atBM078475--5e-1At2g35240plastid developmental protein DAG, putativeO.I.H.G.S.X.
0.3233.40.97Zm.1076.1.S1_atAY103995.1photosystem II subunit29-3e-27At3g08940LHCB4.2 (light harvesting complex PSII)O.I.H.G.S.X.
0.3233.40.96Zm.7097.2.A1_a_atCF019338hypothetical protein LOC100273341 /// 40S ribosomal protein S18-2e-27At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.3233.40.98Zm.3673.1.A1_atAW037200--6e-21At1g14000VIK (VH1-INTERACTING KINASE)O.I.H.G.S.X.
0.3131.60.98Zm.12834.1.A1_atAI491262hypothetical protein LOC100272301-1e+1At4g36410UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)O.I.H.G.S.X.
0.3131.60.98Zm.16537.1.S1_atAY103617.140S ribosomal protein SA-4e-70At1g72370P40O.I.H.G.S.X.
0.3029.80.98Zm.17145.1.S1_atAY211982.1transparent leaf area peptide-9e-1At3g29020MYB110 (myb domain protein 110)O.I.H.G.S.X.
0.3029.80.95Zm.14324.3.A1_x_atAY105596.1hypothetical protein LOC100193273-3e-23At3g27060TSO2 (TSO meaning 'ugly' in Chinese)O.I.H.G.S.X.
0.3029.80.97Zm.17766.1.S1_atCK371550--3e+0At5g14730unknown proteinO.I.H.G.S.X.
0.2928.10.98Zm.886.4.S1_x_atBE051080hypothetical protein LOC100274379-2e+0At1g31750proline-rich family proteinO.I.H.G.S.X.
0.2828.10.96Zm.16838.2.A1_a_atBM336936--1e+1At4g19910Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.2724.60.98Zm.6984.8.A1_a_atAI770763Hypothetical protein LOC100193571-4e+0At5g28615-O.I.H.G.S.X.
0.2724.60.98Zm.15486.2.S1_atAY108982.1--7e-20At1g71270POK (POKY POLLEN TUBE)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.898.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
8.098.0GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
7.697.9GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
7.297.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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