Co-expression analysis

Gene ID Zm.15846.1.A1_s_at
Gene name
Homology with ArabidopsisSimilar to At1g52360: coatomer protein complex, subunit beta 2 (beta prime), putative (HF=1e-4)
Module size 6 genes
NF 0.61
%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.15846.1.A1_s_atAA979796--1e-4At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.9199.00.99Zm.15845.1.S1_atCF244242hypothetical protein LOC100216966-5e+0At3g10850GLY2O.I.H.G.S.X.
0.6077.80.99Zm.3044.2.A1_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.6077.80.99Zm.3044.2.S1_a_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.4352.80.99RPTR-Zm-M10961-2_atRPTR-Zm-M10961-2---O.I.H.G.S.X.
0.2724.60.99RPTR-Zm-M57289-1_s_atRPTR-Zm-M57289-1---O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.898.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
8.098.0GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
7.697.9GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
7.297.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.112557.1.S1_at, orthologous to the query gene, Zm.15846.1.A1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2TaAffx.112557.1.S1_atAt1g52360--4e-1At2g27270-O.I.H.G.S.X.
0.1112.4Ta.14146.3.S1_x_atAt1g52360--2e+1At5g24313unknown proteinO.I.H.G.S.X.
0.067.6Ta.14162.1.S1_atAt1g52360--7e-1At4g36910LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)O.I.H.G.S.X.
0.056.7Ta.1472.1.A1_atAt1g52360--9e-1At1g66540cytochrome P450, putativeO.I.H.G.S.X.
0.045.8TaAffx.120295.1.S1_atAt1g52360--2e+1At5g42504unknown proteinO.I.H.G.S.X.
0.012.4Ta.6893.1.A1_atAt1g52360--4e-1At4g31800WRKY18O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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